PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10000808m | ||||||||
Common Name | EUTSA_v10000808mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 666aa MW: 73136.2 Da PI: 4.9559 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 490 | 535 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Thhalv10000808m 490 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 535 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.2E-55 | 110 | 295 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 486 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-18 | 489 | 555 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.12E-15 | 489 | 540 | No hit | No description |
Pfam | PF00010 | 4.5E-10 | 490 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-18 | 490 | 554 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-17 | 492 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 666 aa Download sequence Send to blast |
MAVGGDFQIA PRTPLSPIAT FPLSIFLQHV TSLCLSLQTG KVFNFHRKYS SILSPSYAHM 60 NDYFLNQSTA TDDNASAPME AFIGTNHSTL WPQPSLPPPP PLSQFNEDTL QQRLQALIES 120 AEENWTYAIF WQISHDFDSP TGDNTLILGW GDGYYRGEED KDKKKKSSSS NPAEQEHRKR 180 VIRELNSLIS GGIGVSDEAN DEEVTDTEWF FLVSMTQSFA NGVGLPGESL LNSRVIWLSG 240 SGALTGSGCE RAHQGQIYGL QTMVCIAAEN GVVELGSSEV ISQSSDLMDK VNSLFNFNNG 300 NGGEACSWGL DLNPDQGEND PALWISEPTT TGVESGQVTP AIHNSNSNSN SKSDSHQISK 360 LEKNESSIEN PRQNPQNPSL VEQDLNFSSS GLNQNGNFPD GSSRMMKSSE TLSFMAEESN 420 KRRSPVSKGS NNDEGMLSFS TVVRSAAKSG DSDHSDLEAS VVKEAIVVEP EKKPRKRGRK 480 PANGREEPLN HVEAERQRRE KLNQRFYSLR AVVPNVSKMD KASLLGDAIS YINELKSKLQ 540 QAESDKEEIQ KQLDGMSKEG NGKSGGSRVK ERKCSNQDSA SSIEMEIDVK IIGWDVMIRV 600 QCSKKNHPGA RFMEALKELD LEVNHASLSV VNDLMIQQAT VKMGSQFFNH DQLKLALMSK 660 VGEDN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-117 | 65 | 291 | 4 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-117 | 65 | 291 | 4 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-117 | 65 | 291 | 4 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 471 | 479 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00085 | PBM | Transfer from AT5G46760 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10000808m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK352707 | 0.0 | AK352707.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-E20. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024010949.1 | 0.0 | transcription factor MYC3 | ||||
Swissprot | Q9FIP9 | 0.0 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | V4L837 | 0.0 | V4L837_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398371.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46760.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10000808m |
Entrez Gene | 18016232 |