PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000641m | ||||||||
Common Name | EUTSA_v10000641mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18040.3 Da PI: 4.3654 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.6 | 2.6e-30 | 5 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C+aCkvl+ C+ +Cv+apyfp+++p+kf vh++FGa+nv k+l++ ++ + e a+++l yeAear++d v G+vg+ l++++ l++lk+ Thhalv10000641m 5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRVHRIFGAENVYKILSNEtfSPLQLEYAVKALSYEAEARIQDLVTGCVGMSLAYEKILNNLKE 98 7*********************************************8764588889************************************** PP DUF260 93 elallkeel 101 +++++k+e+ Thhalv10000641m 99 QIVSAKNEI 107 ***999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.932 | 4 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-29 | 5 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MASNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRVHRI FGAENVYKIL SNETFSPLQL 60 EYAVKALSYE AEARIQDLVT GCVGMSLAYE KILNNLKEQI VSAKNEIVAT MGSDKVREYN 120 DIPMPDDFLM TQNQQMGDNH GADEASTSAT PPASSGGTND TQQIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-29 | 2 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-29 | 2 | 108 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000641m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405169.1 | 1e-122 | LOB domain-containing protein 35 | ||||
Swissprot | Q9FFL3 | 8e-43 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | V4LVU7 | 1e-120 | V4LVU7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405169.1 | 1e-121 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 6e-45 | LOB domain-containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000641m |
Entrez Gene | 18022225 |