PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10000571m | ||||||||
Common Name | EUTSA_v10000571mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 88aa MW: 9897.36 Da PI: 8.3236 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 82.3 | 7.3e-26 | 14 | 87 | 1 | 72 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardP 72 +C+aCkvl+ C+ +Cv+ap fp+++p+kf vh++FGa+nv k+l++ ++ +re a+++l yeAear++dP Thhalv10000571m 14 PCSACKVLKSVCTGECVFAPSFPSTEPEKFDRVHRIFGAENVYKILSNEtfSPLQREYAVKALSYEAEARIQDP 87 7*********************************************876569999******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.439 | 13 | 87 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-24 | 14 | 87 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 88 aa Download sequence Send to blast |
LKEIIQRRRM ASNPCSACKV LKSVCTGECV FAPSFPSTEP EKFDRVHRIF GAENVYKILS 60 NETFSPLQRE YAVKALSYEA EARIQDP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 11 | 87 | 8 | 82 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 11 | 87 | 8 | 82 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10000571m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405173.1 | 2e-50 | LOB domain-containing protein 35 | ||||
Swissprot | O64836 | 1e-26 | LBD10_ARATH; LOB domain-containing protein 10 | ||||
TrEMBL | V4L8A7 | 2e-57 | V4L8A7_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006405177.1 | 3e-58 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23660.2 | 5e-29 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10000571m |
Entrez Gene | 18022233 |
Publications ? help Back to Top | |||
---|---|---|---|
|