PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000556m
Common NameEUTSA_v10000556mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 158aa    MW: 18034.6 Da    PI: 10.971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000556mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.82e-211766255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     gy+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+ +l+g
  Thhalv10000556m 17 GYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 66
                     8********.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-151766IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-221775IPR016177DNA-binding domain
PROSITE profilePS5103222.8271774IPR001471AP2/ERF domain
SMARTSM003809.4E-311782IPR001471AP2/ERF domain
PRINTSPR003674.8E-111829IPR001471AP2/ERF domain
CDDcd000181.13E-161873No hitNo description
Gene3DG3DSA:3.30.730.101.3E-291874IPR001471AP2/ERF domain
PRINTSPR003674.8E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
TEDGVKRWRK MPQKNGGYRG VRKRPWGRWS AEIRDRIGRC RHWLGTFDTA EEAARAYDAA  60
AMRLRGTKAK TNFVVSPFFP EEIAQTQSST TEEDMRRKKK RVNVRKCVKV TSVAQLFSDT  120
LTSSSHNGNV ITPFNNFEKM GFHQLDLKLG LGFFSNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18973671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000556m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405093.21e-113ethylene-responsive transcription factor ERF084
SwissprotQ9M8M52e-45ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLV4NJQ01e-114V4NJQ0_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405093.11e-115(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-46ERF family protein