PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000526m | ||||||||
Common Name | EUTSA_v10000526mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13755.7 Da PI: 4.5593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.9 | 1.2e-31 | 5 | 95 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C+aCkvl+ C+ +Cv+apyfp+++p+kf +h++FGa+nv k+l++ ++ +re a+++l yeAear++dPv G+v+ i + ++++ Thhalv10000526m 5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRMHRIFGAENVYKILSNEtfSPLQREYAVKALSYEAEARIQDPVTGCVEQIISAKNEIVA 95 7*********************************************876569999*****************************9999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.138 | 4 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-30 | 5 | 95 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MASNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRMHRI FGAENVYKIL SNETFSPLQR 60 EYAVKALSYE AEARIQDPVT GCVEQIISAK NEIVATMGSD KVREYNDIPM PDDFLMTQNQ 120 QM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-28 | 2 | 93 | 8 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-28 | 2 | 93 | 8 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000526m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405168.2 | 2e-82 | LOB domain-containing protein 35 | ||||
Swissprot | Q9FFL3 | 2e-39 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | V4L8A2 | 1e-86 | V4L8A2_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006405167.1 | 2e-87 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 9e-42 | LOB domain-containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000526m |
Entrez Gene | 18022223 |