PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000525m | ||||||||
Common Name | EUTSA_v10000525mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 311aa MW: 34488.9 Da PI: 4.4383 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.7 | 3.5e-42 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+++Cv+apyfp +qp+kf vh++FGasnv+k+l++lp+ +reda++sl+yeAear+rdP+yG+vg+i+ lqq l++ +++l Thhalv10000525m 5 PCAACKLLRRKCTQECVFAPYFPPTQPQKFISVHRVFGASNVTKILNDLPPLNREDAVNSLYYEAEARIRDPIYGCVGLISFLQQCLKKIQQDL 98 7********************************************************************************************* PP DUF260 95 allkee 100 +++kee Thhalv10000525m 99 VTAKEE 104 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 1.0E-106 | 2 | 308 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 26.804 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-41 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFISVHRV FGASNVTKIL NDLPPLNRED 60 AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVT AKEELAGYIG PDAVIPQPPY 120 LPPLGNNPPP NFMMAMEGMP HGVIPQGEPM IIRDPNLSQH QHQHQPQDEQ MQLIAADAQR 180 MAAMILDRGD QQGMFNGYGM DNNGSVTATG YNQMDVNDHA AGGSLSGPSL ALGSFGDAYQ 240 MSQETDHHIN HDQLQTQLML QPPLQEGQEQ SEGQFLMQPM GQENLHEDEE EEDLEPPVKW 300 MKAENKEASY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-46 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-46 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000525m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473835 | 0.0 | AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds. | |||
GenBank | AC003040 | 0.0 | AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence. | |||
GenBank | AC004482 | 0.0 | AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404852.1 | 0.0 | LOB domain-containing protein 10 | ||||
Swissprot | O64836 | 1e-180 | LBD10_ARATH; LOB domain-containing protein 10 | ||||
TrEMBL | V4L7G1 | 0.0 | V4L7G1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404852.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14908 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 1e-145 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000525m |
Entrez Gene | 18021897 |
Publications ? help Back to Top | |||
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