PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10000437m | ||||||||
Common Name | EUTSA_v10000437mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 15947.8 Da PI: 4.4453 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.6 | 8.2e-14 | 24 | 88 | 39 | 101 |
DUF260 39 asnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +nv k+l++ ++ +re a+++l yeAear++dPv G+vg+ l++++ l++lk++++++k+e+ Thhalv10000437m 24 SRNVYKILSNEtfSPLQREYAVKALSYEAEARIQDPVTGCVGMSLAYEKILNNLKEQIVSAKNEI 88 57888888765458999******************************************999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.288 | 1 | 88 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-12 | 24 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MASNPCSACK VLKSVCTGEC NFWSRNVYKI LSNETFSPLQ REYAVKALSY EAEARIQDPV 60 TGCVGMSLAY EKILNNLKEQ IVSAKNEIVA TMGSDKVPEY NDIPMPDDFL MTQNQQMGDN 120 HRADEASTSA TPPASSGGTN DTQQTP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10000437m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405171.1 | 6e-98 | LOB domain-containing protein 35 | ||||
Swissprot | Q9FFL3 | 2e-29 | LBD35_ARATH; LOB domain-containing protein 35 | ||||
TrEMBL | V4M315 | 1e-106 | V4M315_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405170.1 | 1e-106 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G35900.1 | 1e-31 | LOB domain-containing protein 35 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10000437m |
Entrez Gene | 18022226 |