PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000432m | ||||||||
Common Name | EUTSA_v10000432mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 27203.1 Da PI: 10.0576 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.5 | 1.2e-20 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n+ n q+t skRr g++KKA+EL++LC+a++a+i+fs+++k++ + Thhalv10000432m 3 KIKNENNFQITSSKRRSGLFKKASELCTLCEADIAIIVFSPSQKIFSF 50 59******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.965 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-16 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-18 | 3 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-21 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-11 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-11 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MIKIKNENNF QITSSKRRSG LFKKASELCT LCEADIAIIV FSPSQKIFSF VDWFLNNNHS 60 PPQQNANMKL NEIRQNSIIQ DLNNQLTQTQ RKRKNKELKK IRKNSKMPRN CWEEPIERLD 120 LAQAYEFKRK LENLKKTVPL EASKFLQTTV PHQNFYAGSS SKALYWVDGG TNINPDLEQL 180 NQRRMMNINA FYNQNIIIPN PSLPFEIINH GNVTEGSIPD YNMNYRPEQK PEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000432m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864686.1 | 4e-88 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-84 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4LVT2 | 1e-170 | V4LVT2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405154.1 | 1e-171 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-79 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000432m |
Entrez Gene | 18022210 |
Publications ? help Back to Top | |||
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