PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000281m | ||||||||
Common Name | EUTSA_v10000281mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 281aa MW: 30341.9 Da PI: 7.7695 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 113 | 167 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Thhalv10000281m 113 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 167 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 7.9e-40 | 113 | 202 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l Thhalv10000281m 113 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 202 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.119 | 109 | 169 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-18 | 111 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.6E-16 | 111 | 173 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.8E-16 | 113 | 167 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-17 | 113 | 167 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.33E-17 | 113 | 170 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 144 | 167 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.5E-9 | 169 | 202 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.3E-24 | 169 | 212 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGFDDSCNTG LVLGLGLSPT PNNYNNAIKR SSSGFKLEPS LTLSLSGDPS VTVVAGADQL 60 CRQTSSHSGV SSFSTGRVVK RERDGGEESP EEEETTERVI SDYHEDEEGV SARKKLRLTK 120 EQSALLEESF KHHSTLNPKQ KQVLARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK 180 CCETLTDENI RLQKEIQELK TLKLSHHPFY MHMPASTLTM CPSCERIGGS SGGGNGGGGA 240 GGGGSVATTV VVDGSTAKGA FSVSSKPHFF NSFTNPSAAC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 169 | RRARTKLKQ |
2 | 230 | 244 | SGGGNGGGGAGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000281m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229218 | 0.0 | AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404745.1 | 0.0 | homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46603 | 1e-153 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | V4M1V8 | 0.0 | V4M1V8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404745.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 1e-137 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000281m |
Entrez Gene | 18021795 |
Publications ? help Back to Top | |||
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