PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000281m
Common NameEUTSA_v10000281mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30341.9 Da    PI: 7.7695
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000281mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18113167256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Thhalv10000281m 113 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 167
                      788899***********************************************98 PP

2HD-ZIP_I/II123.87.9e-40113202191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLEesF+++++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l
  Thhalv10000281m 113 RKKLRLTKEQSALLEESFKHHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELK-TL 202
                      69*************************************************************************************9.44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.119109169IPR001356Homeobox domain
SuperFamilySSF466892.05E-18111177IPR009057Homeodomain-like
SMARTSM003899.6E-16111173IPR001356Homeobox domain
PfamPF000469.8E-16113167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-17113167IPR009057Homeodomain-like
CDDcd000866.33E-17113170No hitNo description
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PfamPF021832.5E-9169202IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.3E-24169212IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGFDDSCNTG LVLGLGLSPT PNNYNNAIKR SSSGFKLEPS LTLSLSGDPS VTVVAGADQL  60
CRQTSSHSGV SSFSTGRVVK RERDGGEESP EEEETTERVI SDYHEDEEGV SARKKLRLTK  120
EQSALLEESF KHHSTLNPKQ KQVLARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK  180
CCETLTDENI RLQKEIQELK TLKLSHHPFY MHMPASTLTM CPSCERIGGS SGGGNGGGGA  240
GGGGSVATTV VVDGSTAKGA FSVSSKPHFF NSFTNPSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169RRARTKLKQ
2230244SGGGNGGGGAGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000281m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292180.0AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404745.10.0homeobox-leucine zipper protein HAT9
SwissprotP466031e-153HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLV4M1V80.0V4M1V8_EUTSA; Uncharacterized protein
STRINGXP_006404745.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-137HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]