PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000242m
Common NameEUTSA_v10000242mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 329aa    MW: 35631.4 Da    PI: 10.3304
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000242mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.2e-31254311359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  Thhalv10000242m 254 DEFSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERAMDDPTMLIVTYEGEHRHH 311
                      99***********************8766****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.7E-18201250IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-32240312IPR003657WRKY domain
PROSITE profilePS5081129.815247313IPR003657WRKY domain
SuperFamilySSF1182903.66E-26250312IPR003657WRKY domain
SMARTSM007741.7E-36252312IPR003657WRKY domain
PfamPF031061.0E-26254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTVDIMRLPK MEDQTAIQEA ASQGLKSMEH LIRVLSNRPE DHNVDCSEIT DFTVGKFKKV  60
ISLLNRTGHA RFRRGPVHSP PSSSSSSAAT APPPPTLVSQ PQPPSQISSP SLTPASFVQS  120
HQQSVTLDFT RPSVFGAKTK SSEIVEFAKE SFSVSSNSSF MSSAITGDGS VSKGSSIFLA  180
PAPAAPVASS AKPPLAALPY RKRCFEHGHS EDFSGKISGS GNGKCHCKKS RKNRMKRTVR  240
VPAISAKIAD IPPDEFSWRK YGQKPIKGSP HPRGYYKCST FRGCPARKHV ERAMDDPTML  300
IVTYEGEHRH HQSAMQENIS PSLVFGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20240310271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000242m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529900.0AK352990.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404990.10.0probable WRKY transcription factor 17
SwissprotQ9SJA80.0WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLE4MWU30.0E4MWU3_EUTHA; mRNA, clone: RTFL01-16-C05
TrEMBLV4M2H80.0V4M2H8_EUTSA; Uncharacterized protein
STRINGXP_006404990.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-168WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]