PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10000124m | ||||||||
Common Name | EUTSA_v10000124mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GRF | ||||||||
Protein Properties | Length: 526aa MW: 56342.2 Da PI: 9.4303 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.5e-25 | 200 | 244 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Thhalv10000124m 200 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 244 79****************************************985 PP | |||||||
2 | QLQ | 51.5 | 3.1e-18 | 136 | 172 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++F+ +Q+++L++Q+l+yKy+ an+PvP+ Ll+ ++k Thhalv10000124m 136 GPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKK 172 59******************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-10 | 136 | 172 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.723 | 137 | 172 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-12 | 137 | 169 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 200 | 244 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-21 | 201 | 243 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MDLGVRFQGS VSGHENGSPV QSELGSGFGN KQERSGFDGE DCWRSSKLSR ISTDGFSSSP 60 AATNKTLSFH QGIPLLRSTS IDPRRQEHML SFSSASDKSD VSPYLQYCRN SVSGYGLGGM 120 MNTSSMHGSL LTGVKGPFSL TQWAELEQQA LIYKYITANV PVPSSLLLSL KKSFFPYGSL 180 PPNSFGWGSF HLGFSGGNMD PEPGRCRRTD GKKWRCSRDA VPDQKYCERH INRGRHRSRK 240 PVEGQNGHNT NPAAASTAAA ASKAAANTVA AMRGSDNNNS LTAVGTQHHA NPTDSLANRV 300 QNSRGGSVFP ATMNLQPKDS HQKQSNNPFE FGLISSDSLL NPSNKQQPSY ANSSKGFGSY 360 LDFSNQAKHS ENHNNVDSWP EELKSDWTQL SMSIPMTPSS PVQDKLALSP LRLSREFDPA 420 IHMGLGVNTE FLEPAKKTNN WIPISWGNNN SMGGPLGEVL NSTTNSPKFG SSPTGVLQKS 480 AFGSLSNSSS GSSAVLGENN NKNGDGKDPL GPTQLMNSSA TGPSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10000124m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN698986 | 0.0 | JN698986.1 Brassica rapa subsp. pekinensis growth-regulating factor 1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006404750.1 | 0.0 | growth-regulating factor 1 | ||||
Swissprot | O81001 | 0.0 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | V4M1W3 | 0.0 | V4M1W3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006404750.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 0.0 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10000124m |
Entrez Gene | 18021800 |
Publications ? help Back to Top | |||
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