PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000076m
Common NameEUTSA_v10000076mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 652aa    MW: 71703.9 Da    PI: 6.7651
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000076mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094544911954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  Thhalv10000076m 454 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 491
                      665569******************************88 PP
2BELL122.91.3e-39312383172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Thhalv10000076m 312 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAIQL 383
                      589*****************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-82234381IPR006563POX domain
PfamPF075261.2E-50240380IPR006563POX domain
PROSITE profilePS5007112.86432495IPR001356Homeobox domain
SMARTSM003891.1E-9435499IPR001356Homeobox domain
CDDcd000861.24E-12435496No hitNo description
SuperFamilySSF466891.33E-17436502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28438501IPR009057Homeodomain-like
PfamPF059202.9E-18452491IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MGLATTTLPH HHHKILDNNS DSMSQDYHHH QGIFSFSNGF HRSSSSHQEE VEESAVSGAP  60
IPVYETAGML SEMFSYPGGG NGGSGEILDQ STKQLLEQQN RHNNNNSTLH MLLPNHHQGN  120
YGFTNEQHHF TWPSSSDHQS QGEMIGTLHV EGGKGLSLSL SSSLEAAAAA KAEEYRSIYC  180
AAVDGTSSSS NASAHHHQFN QLKTLLLDNP SHQHQVVGHF GSSSSSPMVA SSSIGGIYTL  240
RNSKYTKPAQ ELLEEFCSVG RGHFKKNKLS RNNSNPNTSG CGGGGGGGGG GGGGSSLSAG  300
AANDNPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY  360
TTLAQKAMSR HFRCLKDAVA IQLKRSCELL GDKDAAGGAS TGLTKGETPR LRLLEQSLRQ  420
QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ  480
VSNWFINARV RLWKPMVEEM YQQEAKEREE QELEENEKED YQQQRRHQQT NNNNNNDTKP  540
NNESNFTLVQ TITAQTPTTA TMTSTPHEND PSFLPSSSSV AATSHGVSDA FTVATCQQDV  600
SDFHVDDGHV NVIRFGTKQP GDVSLTLGLR HAGNMPDNKN PSFSVRDFGD F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A7e-16441499563Homeobox protein Meis2
4xrm_B7e-16441499563Homeobox protein Meis2
4xrs_A5e-16441498158Homeobox protein Meis1
4xrs_B5e-16441498158Homeobox protein Meis1
5bng_A7e-16441499159Homeobox protein Meis2
5bng_B7e-16441499159Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278294SGCGGGGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000076m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528110.0AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404859.10.0BEL1-like homeodomain protein 4
RefseqXP_024014135.10.0BEL1-like homeodomain protein 4
RefseqXP_024014136.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLE4MWB40.0E4MWB4_EUTHA; mRNA, clone: RTFL01-02-J15
TrEMBLV4LUZ10.0V4LUZ1_EUTSA; Uncharacterized protein
STRINGXP_006404859.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]