PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000028m
Common NameEUTSA_v10000028mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 1037aa    MW: 116879 Da    PI: 8.7692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000028mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18145234495
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      + +++++l ++ l+lp +f++++g+   + ++++l d   rsW + l  + +s+++++++GW++F+++ng k+g f++Fkl+g+ ++++v++
  Thhalv10000028m 145 ANVTASNLCTDTLYLPQHFTSSNGITI-KCRKIVLIDGGERSWALDLMLDETSDTFYISRGWRRFCEENGKKAGGFFTFKLVGN-GETPVLS 234
                      5678999999**********9998765.567****************99********************************995.5556665 PP
2B353.25.5e-17303395199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++p+d+ + +rl+lpk+f+ e+g++k +  ++ l  ++gr+W   l  +k++++   +kGWkeFvk ngL++g   ++kl++ +++++v+
  Thhalv10000028m 303 FVTFTLPPDYDRIRRLTLPKPFVMENGINKGG--EIYLLGKDGRKWPTSLLLDKTGQM-RWRKGWKEFVKGNGLESGF--TLKLIW-EGTTPVF 390
                      778889*********************99755..8***************88888765.7899**************5..566668.8888999 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++++
  Thhalv10000028m 391 SLCSA 395
                      99986 PP
3B363.33.8e-20458551198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++++++ ++++l lp+kf++e+g++k  ++++tl  ++g + + kl ++k++++  l++GWk+FvkangLk gD++++kl++ +e+++++
  Thhalv10000028m 458 FLSFTITPYSVEKCILPLPRKFTRENGINK--PRMITLLGKDGIKQQTKLLFSKGKKA-ALGNGWKSFVKANGLKIGDSFTLKLIW-EETTPML 547
                      6778899********************995..559***************98888765.69*************************.7777999 PP

                      EEE- CS
               B3  95 kvfr 98 
                      +++ 
  Thhalv10000028m 548 SLCH 551
                      8885 PP
4B360.62.7e-19619710498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++++++ k+++l+lpk f++e++++k  + +++l  ++g + + kl ++k+ g ++l+kGW +F+kangLk+g ++++kl++ +++++v++++
  Thhalv10000028m 619 LTMTPYSVKKCILRLPKAFTRENDINK--HAMIILLGKDGIKHQTKLLWDKGTGIMTLGKGWMDFAKANGLKTGNSFTLKLTW-EDTTPVLSLC 709
                      57899******************9995..569*************************************************99.8888999998 PP

                      - CS
               B3  98 r 98 
                       
  Thhalv10000028m 710 H 710
                      6 PP
5B346.18.6e-158359081793
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      +lp +fa+e++++k++  ++ l  ++g++W v+l ++ ++gr+ l++ WkeF+kan+Lk+g+++  +l+++++++++
  Thhalv10000028m 835 TLPAQFARENSLNKPG--MIDLLGKDGKKWMVNL-VQDGDGRMNLGNDWKEFAKANDLKTGESFKMELISEDGTRML 908
                      89*********99766..8***************.566667788************************996555443 PP
6B346.95.1e-159451035498
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95  
                       +ltp+dv + ++l lp +f++++g++k +  ++t+  e+  +W+ +l  + ++g++ l++GW eF+kang+k g++++++++ + +++ v+k
  Thhalv10000028m  945 TLTPEDV-RACILHLPSQFMKANGINKLG--EITILGENKVEWSAYL-LSIRDGTVALENGWDEFCKANGVKLGESFTLEFVYELNTSIVLK 1032
                       4555555.5688************99766..8***************.6888889*************************887766667777 PP

                       EE- CS
               B3   96 vfr 98  
                       +++
  Thhalv10000028m 1033 FCS 1035
                       776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.1E-5179IPR003340B3 DNA binding domain
CDDcd100171.56E-8174No hitNo description
SuperFamilySSF1019362.94E-10181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-11281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-20135238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-19136237IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-16142235No hitNo description
PROSITE profilePS5086314.339142238IPR003340B3 DNA binding domain
SMARTSM010191.9E-25143239IPR003340B3 DNA binding domain
PfamPF023626.1E-16144233IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-16297393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-16297394IPR015300DNA-binding pseudobarrel domain
CDDcd100177.39E-16301394No hitNo description
PROSITE profilePS5086312.957303396IPR003340B3 DNA binding domain
SMARTSM010192.8E-28303396IPR003340B3 DNA binding domain
PfamPF023621.5E-15303395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19450563IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-20455557IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-29458553IPR003340B3 DNA binding domain
PfamPF023625.2E-19458551IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606458553IPR003340B3 DNA binding domain
CDDcd100172.15E-16462550No hitNo description
Gene3DG3DSA:2.40.330.102.1E-19607718IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22612716IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.2E-21616712IPR003340B3 DNA binding domain
CDDcd100171.30E-17616709No hitNo description
PROSITE profilePS5086311.801616712IPR003340B3 DNA binding domain
PfamPF023625.5E-17618711IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858819914IPR003340B3 DNA binding domain
SMARTSM010199.7E-18824914IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-15834913IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-15835919IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-13835910IPR003340B3 DNA binding domain
CDDcd100171.13E-13835905No hitNo description
Gene3DG3DSA:2.40.330.101.8E-169341031IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-179371034IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-129401022No hitNo description
SMARTSM010195.8E-199411036IPR003340B3 DNA binding domain
PROSITE profilePS5086312.3239411036IPR003340B3 DNA binding domain
PfamPF023621.3E-139451035IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MIPVDFFSMY VEGKRSVEKT TAELKSDSSD ITWRAKMTGR RLSDGWEEFA VANNFRTGDV  60
VLVRYEGDLV FHVSDLGPNC CDVTFPSNKD QNNNNCDFLL KKHKHPRTDV GDDEEVPKKK  120
KVKKKNSVDE TEADSSSLDN SCFVANVTAS NLCTDTLYLP QHFTSSNGIT IKCRKIVLID  180
GGERSWALDL MLDETSDTFY ISRGWRRFCE ENGKKAGGFF TFKLVGNGET PVLSFSPTES  240
IDNRRPRDCS EATGRVSLST ELSNKEADIE GERNEDECRI LETEKKKRRV LSYASYSPCR  300
KRFVTFTLPP DYDRIRRLTL PKPFVMENGI NKGGEIYLLG KDGRKWPTSL LLDKTGQMRW  360
RKGWKEFVKG NGLESGFTLK LIWEGTTPVF SLCSAESASD REEKEFSKAV EKQSIFKDPS  420
KKDKIGKDEN KKEERRSMER GKDHLRGRNS TASSQDQFLS FTITPYSVEK CILPLPRKFT  480
RENGINKPRM ITLLGKDGIK QQTKLLFSKG KKAALGNGWK SFVKANGLKI GDSFTLKLIW  540
EETTPMLSLC HGECSIDRGE SSETDQKNSL PIEPSSCEKL SKDENSKVEN KETMSMEREK  600
NHLRGRESTP SSQKQSVTLT MTPYSVKKCI LRLPKAFTRE NDINKHAMII LLGKDGIKHQ  660
TKLLWDKGTG IMTLGKGWMD FAKANGLKTG NSFTLKLTWE DTTPVLSLCH AECSMDRGSG  720
GECSETDQKK SLPIEPSSCE KISKDENSKE KNNNEANKKE ETMSMEREKN HLRGRDSTPS  780
TQKQLMTLTI TPSSYSKCKL VSLSNNSCFR IQMISFFSCT LIGIIRILLS NLFQTLPAQF  840
ARENSLNKPG MIDLLGKDGK KWMVNLVQDG DGRMNLGNDW KEFAKANDLK TGESFKMELI  900
SEDGTRMLKL VHSNPNSSKA NEKESTEPRS RDSSSAIQNR TLTLTLTPED VRACILHLPS  960
QFMKANGINK LGEITILGEN KVEWSAYLLS IRDGTVALEN GWDEFCKANG VKLGESFTLE  1020
FVYELNTSIV LKFCSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288KKKRR
2284289KKKRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000028m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014112.10.0B3 domain-containing protein REM13
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLV4NJI60.0V4NJI6_EUTSA; Uncharacterized protein
STRINGXP_006405008.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.10.0DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]