PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943953.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 538aa    MW: 60305.5 Da    PI: 6.5287
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943953.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-13449498147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + +W+  E+e l +av+++G g+Wk I ++ +   k+Rt+ ++k++w++ 
   XP_010943953.1 449 KRKWSSLEEETLRKAVERHGAGNWKFIKSCHPeifKNRTEVDLKDKWRNM 498
                      569*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.31444503IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-13446503IPR009057Homeodomain-like
SuperFamilySSF466891.87E-15446500IPR009057Homeodomain-like
SMARTSM007176.6E-9448501IPR001005SANT/Myb domain
PfamPF002493.7E-10449498IPR001005SANT/Myb domain
CDDcd116602.62E-18450500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLDPRIASWI LEFVLRQPVE DWLANELLFA LPLPSPIPPR LKKTFLLRRL SSDVSHRSLA  60
GSTLFSLELI EELDRSSGAD APSDSLAAAY AAVAVECTAR FLRGRLDGDR GGNFFEAVNR  120
IWSCRVADLE RSEAAGLVSA TLREARREME EAVVNPIVRV GLMGRDTKMA ALDAVRVYLE  180
EAEKEMGPPY LECVAETVGE EWRRSSVTGS DGSVGELDAK LRNLLARQVE DGRCDGPPDG  240
DRAKSFGLVE LEKLEESVLD RGKDAPKQGG CSTDKFERLP ATAAEVMKAK NVFRSSVLPA  300
KIDNMKENQN QMDLNPVFSV NDCAGKGNES DHDAMSQQNL MDQDPSDLKH VEENRERAFL  360
SSIDKGTKDG NPGTCTCTRD NIDCAGAQKP SLMDWNPTAR RFEQDEDFSL SPSENSPNPS  420
NNLRFPSTKR RKFSLALEDN RTFIIRRRKR KWSSLEEETL RKAVERHGAG NWKFIKSCHP  480
EIFKNRTEVD LKDKWRNMMR DHHPKIILLG HGKSLMTLST RSVCMLMLVL PFLKSALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429450RRKFSLALEDNRTFIIRRRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116678.10.0uncharacterized protein LOC105061561 isoform X3
TrEMBLA0A2H3XWE61e-176A0A2H3XWE6_PHODC; uncharacterized protein LOC103707169 isoform X1
STRINGXP_008789777.11e-177(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-10MYB_related family protein