PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 547aa MW: 61413.7 Da PI: 6.6775 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.2e-13 | 449 | 498 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 + +W+ E+e l +av+++G g+Wk I ++ + k+Rt+ ++k++w++ XP_010943950.1 449 KRKWSSLEEETLRKAVERHGAGNWKFIKSCHPeifKNRTEVDLKDKWRNM 498 569*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.31 | 444 | 503 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-13 | 446 | 503 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-15 | 446 | 500 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-9 | 448 | 501 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-10 | 449 | 498 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.84E-18 | 450 | 500 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MLDPRIASWI LEFVLRQPVE DWLANELLFA LPLPSPIPPR LKKTFLLRRL SSDVSHRSLA 60 GSTLFSLELI EELDRSSGAD APSDSLAAAY AAVAVECTAR FLRGRLDGDR GGNFFEAVNR 120 IWSCRVADLE RSEAAGLVSA TLREARREME EAVVNPIVRV GLMGRDTKMA ALDAVRVYLE 180 EAEKEMGPPY LECVAETVGE EWRRSSVTGS DGSVGELDAK LRNLLARQVE DGRCDGPPDG 240 DRAKSFGLVE LEKLEESVLD RGKDAPKQGG CSTDKFERLP ATAAEVMKAK NVFRSSVLPA 300 KIDNMKENQN QMDLNPVFSV NDCAGKGNES DHDAMSQQNL MDQDPSDLKH VEENRERAFL 360 SSIDKGTKDG NPGTCTCTRD NIDCAGAQKP SLMDWNPTAR RFEQDEDFSL SPSENSPNPS 420 NNLRFPSTKR RKFSLALEDN RTFIIRRRKR KWSSLEEETL RKAVERHGAG NWKFIKSCHP 480 EIFKNRTEVD LKDKWRNMMR DHHPKIILLG HGKSLMTLST RSVCMLMLVL PFLKSGKYLH 540 ELSLLHN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 429 | 450 | RRKFSLALEDNRTFIIRRRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116678.1 | 0.0 | uncharacterized protein LOC105061561 isoform X3 | ||||
TrEMBL | A0A2H3XWE6 | 1e-176 | A0A2H3XWE6_PHODC; uncharacterized protein LOC103707169 isoform X1 | ||||
STRING | XP_008789777.1 | 1e-177 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16050 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 2e-10 | MYB_related family protein |