PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943949.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 178aa    MW: 20029.1 Da    PI: 8.6705
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943949.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-4267144178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+e+C+adl+eak+yhrrhkvCe+hska+ v+v+gl+qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  XP_010943949.1  67 CCQAEKCTADLTEAKRYHRRHKVCEAHSKASIVIVAGLRQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKSSS 144
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-3560129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.41965142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.06E-3866145IPR004333Transcription factor, SBP-box
PfamPF031106.1E-3268141IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MERRPPAEPK RSGKEKPRKD AAAMDDDGDD DEEEVVAGEE EDRKRRPPPP SSAARRGSGG  60
GGTSQPCCQA EKCTADLTEA KRYHRRHKVC EAHSKASIVI VAGLRQRFCQ QCSRFHELSE  120
FDDSKRSCRR RLAGHNERRR KSSSESQGEG SSQCRQADPE ERIQSLPGNP TCKHFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3761141484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146DRKRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943949.11e-125squamosa promoter-binding protein 1
SwissprotQ387408e-43SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLA0A2H3Z9B54e-70A0A2H3Z9B5_PHODC; squamosa promoter-binding protein 1-like
STRINGXP_008810376.17e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.29e-39squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]