PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943890.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 252aa    MW: 27114.9 Da    PI: 8.7402
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943890.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-161765149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie +  rq+ fskRr g++ KA+ LS+LC+ +vav+ fs++gk + +
  XP_010943890.1 17 KRIEKEEARQICFSKRRSGVFTKASDLSTLCGPDVAVLAFSPRGKPFSF 65
                    79******************************************96655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-24968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.834969IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-231078IPR002100Transcription factor, MADS-box
CDDcd002656.64E-321077No hitNo description
PRINTSPR004047.9E-171131IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211865IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPRKTRTTRG KQKIEIKRIE KEEARQICFS KRRSGVFTKA SDLSTLCGPD VAVLAFSPRG  60
KPFSFGSPAV NPVIDRFVLD ISSSPGSGHH CGPPSNTVQQ LSKLCLDLTN QLHACKAKSA  120
VLEEKLSSPG YDILELDWFE NVDDLELDKL GKLAEALKRV KVNADAHVDA RLLHGRGALS  180
SSTTPVMTAN QVEGASSSNR VMAAASSKGV MAAGNVGTSN YSVADRLVAE MMMFSPPSLP  240
YDDQGFGPGF LF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943890.10.0agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XQV22e-81A0A2H3XQV2_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008787358.13e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5090422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-20AGAMOUS-like 29