PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943830.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 317aa    MW: 34861.5 Da    PI: 8.1261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943830.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10147193455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  Av+Y+k+L+
  XP_010943830.1 147 EHIIAERKRREKLSQRFIALSAVIPGL-----KKKDKASVLGDAVKYVKELE 193
                     5999***********************.....89***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.046143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-15147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-10148197No hitNo description
SMARTSM003532.2E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDESNLIYEC DMSSFNQFTP QRVAPALVGG FQQPLSSESH TSYPSFHPVE TPSHISFSER  60
PEKMKKINSW NSRTTEQNPT LIPDASSADS LSFRNPNSPN DVFGRAAVSQ EEMRALVSNG  120
SAQNYETLAQ RGSKMTQMGS ILSQAHEHII AERKRREKLS QRFIALSAVI PGLKKKDKAS  180
VLGDAVKYVK ELEARVKNLE DQNAKRTVES VVLVKKSKLS ADADGSSSNG CSAEKPLPEI  240
EAMLSEKTVL VRIHCDNHKG VLGRLVSEIE KVHLTVTNAS VMPFPSSSIH ITLTAKVEEE  300
FSMAVGDLVR KLHSALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13148196957Transcription factor MYC2
5gnj_B2e-13148196957Transcription factor MYC2
5gnj_E2e-13148196957Transcription factor MYC2
5gnj_F2e-13148196957Transcription factor MYC2
5gnj_G2e-13148196957Transcription factor MYC2
5gnj_I2e-13148196957Transcription factor MYC2
5gnj_M2e-13148196957Transcription factor MYC2
5gnj_N2e-13148196957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943830.20.0transcription factor bHLH18-like
SwissprotQ9T0723e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3ZN281e-156A0A2H3ZN28_PHODC; transcription factor bHLH18-like
STRINGXP_008787834.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-49bHLH family protein