PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27907.4 Da PI: 8.458 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.2 | 7.4e-45 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pG+rF Pt+eel+++yL++k+++++ ++e+vi+ +d+y ++Pw+Lp+ ++ ++++w+fF++r++++a+g r++r+t sgyWkatg+ XP_010943816.1 4 LAPGYRFYPTEEELLSFYLHNKLKKRREDMERVIPVADVYCFDPWQLPQisgepCI-RDSEQWFFFCPRQEREAHGGRPTRTTPSGYWKATGSPS 97 579***************************99****************64555433.2667********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfy+grap+g+kt+W m+eyr+ XP_010943816.1 98 LVYSSTHRVIGVKKTMVFYQGRAPTGTKTKWKMNEYRA 135 ************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-50 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.106 | 4 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-24 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MNNLAPGYRF YPTEEELLSF YLHNKLKKRR EDMERVIPVA DVYCFDPWQL PQISGEPCIR 60 DSEQWFFFCP RQEREAHGGR PTRTTPSGYW KATGSPSLVY SSTHRVIGVK KTMVFYQGRA 120 PTGTKTKWKM NEYRAFEEDA TITTLTEIPK LQGEFSLCRV YTRSGSIRSF DRRPSVAITA 180 SESQRMPEAL PSMDTRFLAK RARSEGSSSP EDDGCSRSMH HRRTNDPKGI EDNDWDLLDW 240 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 3 | 166 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 3 | 166 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 3 | 166 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 3 | 166 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-34 | 3 | 166 | 19 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-34 | 3 | 166 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 3 | 166 | 16 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943816.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 6e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2H3Y6N8 | 1e-159 | A0A2H3Y6N8_PHODC; NAC domain-containing protein 90 | ||||
STRING | XP_008794217.1 | 1e-160 | (Phoenix dactylifera) | ||||
STRING | XP_008806117.1 | 1e-160 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-76 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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