PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943816.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 241aa    MW: 27907.4 Da    PI: 8.458
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943816.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.27.4e-4541351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     l+pG+rF Pt+eel+++yL++k+++++ ++e+vi+ +d+y ++Pw+Lp+     ++  ++++w+fF++r++++a+g r++r+t sgyWkatg+  
  XP_010943816.1   4 LAPGYRFYPTEEELLSFYLHNKLKKRREDMERVIPVADVYCFDPWQLPQisgepCI-RDSEQWFFFCPRQEREAHGGRPTRTTPSGYWKATGSPS 97 
                     579***************************99****************64555433.2667********************************** PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s++++++g+kkt+vfy+grap+g+kt+W m+eyr+
  XP_010943816.1  98 LVYSSTHRVIGVKKTMVFYQGRAPTGTKTKWKMNEYRA 135
                     ************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-502162IPR003441NAC domain
PROSITE profilePS5100549.1064163IPR003441NAC domain
PfamPF023654.7E-246134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MNNLAPGYRF YPTEEELLSF YLHNKLKKRR EDMERVIPVA DVYCFDPWQL PQISGEPCIR  60
DSEQWFFFCP RQEREAHGGR PTRTTPSGYW KATGSPSLVY SSTHRVIGVK KTMVFYQGRA  120
PTGTKTKWKM NEYRAFEEDA TITTLTEIPK LQGEFSLCRV YTRSGSIRSF DRRPSVAITA  180
SESQRMPEAL PSMDTRFLAK RARSEGSSSP EDDGCSRSMH HRRTNDPKGI EDNDWDLLDW  240
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-34316616168NO APICAL MERISTEM PROTEIN
1ut4_B2e-34316616168NO APICAL MERISTEM PROTEIN
1ut7_A2e-34316616168NO APICAL MERISTEM PROTEIN
1ut7_B2e-34316616168NO APICAL MERISTEM PROTEIN
3swm_A2e-34316619171NAC domain-containing protein 19
3swm_B2e-34316619171NAC domain-containing protein 19
3swm_C2e-34316619171NAC domain-containing protein 19
3swm_D2e-34316619171NAC domain-containing protein 19
3swp_A2e-34316619171NAC domain-containing protein 19
3swp_B2e-34316619171NAC domain-containing protein 19
3swp_C2e-34316619171NAC domain-containing protein 19
3swp_D2e-34316619171NAC domain-containing protein 19
4dul_A2e-34316616168NAC domain-containing protein 19
4dul_B2e-34316616168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943816.10.0NAC domain-containing protein 90
SwissprotQ9FMR36e-74NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2H3Y6N81e-159A0A2H3Y6N8_PHODC; NAC domain-containing protein 90
STRINGXP_008794217.11e-160(Phoenix dactylifera)
STRINGXP_008806117.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-76NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]