PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 183aa MW: 21514.9 Da PI: 8.5172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.3e-10 | 11 | 57 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 r +WT Ed+ + +a + g +W++Ia++++ gRt+ ++ +++ XP_010943785.1 11 RRAWTRMEDKAFERALVAIPEGtpdRWSLIAAHVP-GRTPRELSEHYE 57 679********************************.**********96 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.9e-14 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt q+ s+ qky XP_010943785.1 115 PWTEEEHRLFLEGLARYGRGDWRNISRWAVKTRTSTQVASHAQKY 159 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.835 | 6 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-7 | 11 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-7 | 11 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.35E-11 | 12 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.96E-7 | 13 | 60 | No hit | No description |
PROSITE profile | PS51294 | 16.252 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-17 | 110 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 112 | 162 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.5E-16 | 113 | 163 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.63E-9 | 115 | 160 | No hit | No description |
Pfam | PF00249 | 6.3E-11 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-11 | 115 | 158 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEFFSIEGEA RRAWTRMEDK AFERALVAIP EGTPDRWSLI AAHVPGRTPR ELSEHYEVLV 60 QDLTVIERGE VEIPREWDDE EVSRSSDAAR TFDHCSPHSF GRARRRSEER RRGIPWTEEE 120 HRLFLEGLAR YGRGDWRNIS RWAVKTRTST QVASHAQKYF IRQNQNASNR DSKRKSIHDI 180 TNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-16 | 12 | 74 | 9 | 71 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943784.1 | 1e-132 | transcription factor DIVARICATA | ||||
Refseq | XP_029116633.1 | 1e-132 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-46 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2H3Z6D9 | 1e-81 | A0A2H3Z6D9_PHODC; transcription factor DIVARICATA-like | ||||
STRING | XP_008808839.1 | 2e-82 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-46 | MYB family protein |
Publications ? help Back to Top | |||
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