PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRF | ||||||||
Protein Properties | Length: 354aa MW: 38604.6 Da PI: 8.8419 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 7.1e-25 | 74 | 118 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_010943630.1 74 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 118 79****************************************986 PP | |||||||
2 | QLQ | 63.4 | 5.6e-22 | 13 | 48 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky++a++PvPp+Ll +i++ XP_010943630.1 13 PFTASQWQELEHQALIFKYIMAGVPVPPDLLIPIRR 48 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-12 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-16 | 13 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.178 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 74 | 118 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.2E-21 | 75 | 117 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MNSAAAAAGW RPPFTASQWQ ELEHQALIFK YIMAGVPVPP DLLIPIRRSF EAAPARFYHH 60 PALGYCSFYG KKLDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN RSRKPVESQT 120 LSQSQSSSST VTSLAPSGSS ASRSGSGSFQ SIPLHSISGG SNLQGSYPGG TISSQLHMDP 180 HSYGIRSSGS SRYLSGLKGE VDEHSFFSEA SGSARGLGMD SSVDSSWRLM PSGISSFPLS 240 KSRDPSVLQS AGAYPSLQSV QDLGQVTISS LPKHQQQHSF FGSDFGSAEP VKHEGGSQSL 300 RPFFDEWPKT RDSWSDLEEE RSNRISFSTT QLSISIPMAS SDFSTSSSRS PNDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943630.1 | 0.0 | growth-regulating factor 4 | ||||
Swissprot | Q6AWY4 | 1e-113 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | A0A2H3ZGE7 | 0.0 | A0A2H3ZGE7_PHODC; growth-regulating factor 4-like | ||||
STRING | XP_008813471.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-47 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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