PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943629.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRF
Protein Properties Length: 355aa    MW: 38575.6 Da    PI: 9.2903
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943629.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.47.1e-2574118145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  XP_010943629.1  74 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 118
                     79****************************************986 PP
2QLQ63.45.7e-221348237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FTa+Q+q+L++Q+l++Ky++a++PvPp+Ll +i++
  XP_010943629.1 13 PFTASQWQELEHQALIFKYIMAGVPVPPDLLIPIRR 48
                    9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-121248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-161347IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.1781348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76274118IPR014977WRC domain
PfamPF088794.2E-2175117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNSAAAAAGW RPPFTASQWQ ELEHQALIFK YIMAGVPVPP DLLIPIRRSF EAAPARFYHH  60
PALGYCSFYG KKLDPEPGRC RRTDGKKWRC SKDAYPDSKY CERHMHRGRN RSRKPVESQT  120
LSQSQSSSST VTSLAPSGSS ASRSGSGSFQ SIPLHSISGG SNLQGSYPGG TISSQLHMDP  180
HSYGIRSSGS SRYLSGLKGE VDEHSFFSEA SGSARGLGMD SSVDSSWRLM PSGISSFPLS  240
KSRDPSVLQS AGAYPSLQSV QDLGQVTISS LPKHQQQHSF FGSDFGSAEP VKHEGGSQSL  300
RPFFDEWPKT RDSWSDLEEE RSNRISFSTT QLSISIPMAS SDFSTSSSRS PNGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943630.10.0growth-regulating factor 4
SwissprotQ6AWY41e-113GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A2H3ZGE70.0A0A2H3ZGE7_PHODC; growth-regulating factor 4-like
STRINGXP_008813471.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-47growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]