PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943602.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 663aa    MW: 72539.5 Da    PI: 7.334
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943602.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-16315374155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010943602.1 315 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 374
                     78*******************988886678446*************************98 PP
2AP247.15.8e-15419468355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  XP_010943602.1 419 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 468
                     9***************999754...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.23E-22315382No hitNo description
SuperFamilySSF541711.31E-16315383IPR016177DNA-binding domain
PfamPF008479.1E-13315374IPR001471AP2/ERF domain
SMARTSM003803.3E-29316388IPR001471AP2/ERF domain
PROSITE profilePS5103219.203316382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-16316383IPR001471AP2/ERF domain
PRINTSPR003675.1E-6317328IPR001471AP2/ERF domain
CDDcd000181.07E-24417478No hitNo description
SuperFamilySSF541711.9E-17417477IPR016177DNA-binding domain
SMARTSM003807.0E-34418482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-18418476IPR001471AP2/ERF domain
PROSITE profilePS5103219.164418476IPR001471AP2/ERF domain
PfamPF008471.5E-9419468IPR001471AP2/ERF domain
PRINTSPR003675.1E-6458478IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MKSMNNNNWL GFSLSPHISM EVSADPHHQP SSQSHHHQSQ PTPAAVSSGN FFLSPPHLSS  60
SGICYGVGEN GGFYSQLPSM PLKSDGSLCI MEALSRSQQE GMVPSPSPKL EDFLGCGPNM  120
GTHQYGNSDR GAMALSLDSM YYHQNPESEG NRGHPLDLLQ QPFRQHIQVQ QQQQQQHQPP  180
PPYFQPLQEG MCSVLTGHEM YQPPLEEEQI GDGGIPGLKN WVTRSFSAAN NGLGEEGGVG  240
SGGPLGAMGY GDLQSLSLSM SPGSQSSCVT APQHIPPAAN DYMALDGSRK RGTGKGGQKQ  300
PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK  360
AARAYDLAAL KYWGPSTHIN FPLEDYQQEL EEMKNMSRQE YVAHLRRKSS GFSRGASMYR  420
GVTRHHQHGR WQARIGRVSG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN AVTNFDITRY  480
NVEKIMASST LLSGELARRN KDAEARNDAP SIQNSSRELN LTEDNSSGGS EWKMSLYQSP  540
HQPSPISEEH GEKLMSGGDA FRNPSYSTSL HGLVGMDTVG SAQGINNSGN MGNAHLSNAS  600
SLVTSLSNSR EGSPDRGGLP MLFAKPSPRL INSAPVNSWI PSTGLRPPMP MSHMPVFAAW  660
TDS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943602.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-159CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H3YD110.0A0A2H3YD11_PHODC; AP2-like ethylene-responsive transcription factor CRL5
STRINGXP_008796976.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]