PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943399.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 287aa    MW: 32267.2 Da    PI: 8.6862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943399.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
   XP_010943399.1 14 KGPWSPEEDSKLKEFIEKYGTGgNWISLPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding353.2e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010943399.1  69 GEFSDDEDRIICGLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.136966IPR017930Myb domain
SuperFamilySSF466898.99E-2711109IPR009057Homeodomain-like
SMARTSM007176.3E-131364IPR001005SANT/Myb domain
PfamPF002492.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231569IPR009057Homeodomain-like
CDDcd001676.52E-101662No hitNo description
SMARTSM007174.2E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129416.29767117IPR017930Myb domain
PfamPF002496.6E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIS LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC GLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI  120
APSQRKSHQQ QQQRKQQQQQ LLFPSPSSSS QGSRYTSPLP PLPVLESFPK ISQDAFTIVP  180
TTTSSTLLQG PSYQYQMKES GNNTIMFGSE HSCSSSDGSS TQISYGKMDH NYICRGGGGE  240
QMGFESSLCG GGIEDYGPSR LWEEAPLEYN YEEIKQLLRG NNDHYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943399.10.0transcription factor RAX2
TrEMBLA0A2H3Z6N31e-144A0A2H3Z6N3_PHODC; myb-related protein 308
STRINGXP_008784046.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-75myb domain protein 36