PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943383.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 782aa MW: 84464.2 Da PI: 8.1444

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943383.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.2	6.9e-29	68	157	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA++vGF++r+s+ ++s+r+++i++r+ vCskeg+re + ++ +e+++r+ra+tr+gCka+++vkk +kw vtk+++eHnH XP_010943383.1 68 FYAAYARHVGFRIRISRYTRSRRDNSIISRRIVCSKEGFREARANEglfDERRQRQRAVTRVGCKAMIMVKKIGPEKWIVTKFVKEHNHG 157 9*****************************************9999***************************************5 PP
2	FAR1	90.2	2.8e-28	205	297	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+ r+sk +s+r+++i++r+ vCskeg+re + k+ + k++r+r+ tr+gCka++ vkk ++gkw vtk+e+eHnH+l+ XP_010943383.1 205 FYITYARHMGFRARISKYCRSRRDNSIISRQIVCSKEGFREVRVKNeitdEGKTKRPRVITRIGCKAMIIVKKANSGKWIVTKFEKEHNHALT 297 9****************************************9999998899999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-25	68	157	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.2E-26	205	297	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MEDELVKSHI ESEDGKTEVI MDIEPSVHED NKMLQSPVKG EVVASGGVMD LQPYEGMEFE 60 SEEAARAFYA AYARHVGFRI RISRYTRSRR DNSIISRRIV CSKEGFREAR ANEGLFDERR 120 QRQRAVTRVG CKAMIMVKKI GPEKWIVTKF VKEHNHGPVP PRKVEVRTVR RDDDLLVQSY 180 ISDGGAVQEP CEGMEFDSEE AAKAFYITYA RHMGFRARIS KYCRSRRDNS IISRQIVCSK 240 EGFREVRVKN EITDEGKTKR PRVITRIGCK AMIIVKKANS GKWIVTKFEK EHNHALTSLK 300 MPHLESHSNA GKVINLQGAI AKPNGMVTDE SCAGIQGTSR ESLTVLYNQL CYEAIKYAQE 360 GAATEDSYNV AMSALKEAVE KVAAAKRGAV TVAQQALPIG GAKQAFLVAH PAQTKALQDL 420 QCLNEVKQVP LILNIANGQL LHGSSDGFHT AHATQVLNVA NAVSVLKQSL PSTPSTDGLI 480 GNGSEERSGL PAERMMAVQI VDRDVELDAS VQKSQNQDSS SAAKAGSTPG RGNHLTSPGS 540 SETQMVAIPA VPVTVYMPVM GTSCSVANPG TPGGSYTLVA APIKALPLSA RPAGPSPQLQ 600 DAPLQPAAAA ASQSGVLVLT PSPGNLLEHC ESYSGPNPQV HATAIACGAR VVPPKAAASL 660 IKAIEARIRS GRASVAKSTL TGGCKSLSVQ SPMPCAIEEG KREHATVNTI HKSPTESLEE 720 MKVRTIDMVP KELVVDPDCS VAGNAGQNGS LFEKQIELLD TVGAAEDLSM FEKRAWTEIQ 780 CD

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MEDELVKSHI ESEDGKTEVI MDIEPSVHED NKMLQSPVKG EVVASGGVMD LQPYEGMEFE  60
SEEAARAFYA AYARHVGFRI RISRYTRSRR DNSIISRRIV CSKEGFREAR ANEGLFDERR  120
QRQRAVTRVG CKAMIMVKKI GPEKWIVTKF VKEHNHGPVP PRKVEVRTVR RDDDLLVQSY  180
ISDGGAVQEP CEGMEFDSEE AAKAFYITYA RHMGFRARIS KYCRSRRDNS IISRQIVCSK  240
EGFREVRVKN EITDEGKTKR PRVITRIGCK AMIIVKKANS GKWIVTKFEK EHNHALTSLK  300
MPHLESHSNA GKVINLQGAI AKPNGMVTDE SCAGIQGTSR ESLTVLYNQL CYEAIKYAQE  360
GAATEDSYNV AMSALKEAVE KVAAAKRGAV TVAQQALPIG GAKQAFLVAH PAQTKALQDL  420
QCLNEVKQVP LILNIANGQL LHGSSDGFHT AHATQVLNVA NAVSVLKQSL PSTPSTDGLI  480
GNGSEERSGL PAERMMAVQI VDRDVELDAS VQKSQNQDSS SAAKAGSTPG RGNHLTSPGS  540
SETQMVAIPA VPVTVYMPVM GTSCSVANPG TPGGSYTLVA APIKALPLSA RPAGPSPQLQ  600
DAPLQPAAAA ASQSGVLVLT PSPGNLLEHC ESYSGPNPQV HATAIACGAR VVPPKAAASL  660
IKAIEARIRS GRASVAKSTL TGGCKSLSVQ SPMPCAIEEG KREHATVNTI HKSPTESLEE  720
MKVRTIDMVP KELVVDPDCS VAGNAGQNGS LFEKQIELLD TVGAAEDLSM FEKRAWTEIQ  780
CD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943383.1	0.0	uncharacterized protein LOC105061119
Refseq	XP_010943384.1	0.0	uncharacterized protein LOC105061119
TrEMBL	A0A2H3YYJ6	0.0	A0A2H3YYJ6_PHODC; uncharacterized protein LOC103718605
STRING	XP_008805726.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-32	FAR1 family protein