PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943315.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 547aa    MW: 59653 Da    PI: 6.9553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943315.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.00031240257219
                     HHHHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsa 19 
                     r +h++ E+rRR++iN++
  XP_010943315.1 240 RSKHSATEQRRRSKINDR 257
                     889*************96 PP
2HLH26.51.2e-082773101855
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  XP_010943315.1 277 CRFQILRELIPHS----DQKRDKASFLLEVIEYIRFLQ 310
                     58**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-20235333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.283238309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-12240314No hitNo description
SMARTSM003539.7E-4244315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10274328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6278310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MRMELQGKKT THDFLSLYNK DSPFQHQDPR PPSQGCFLKT HDFLKPLEHA GKGRRDEAAS  60
GDIAVACVGP AEVGRAASVE HVLPGGIGTY SITHVSDPSP LAMVKPERGT CRGVDVERKP  120
EPYYANGVAY APQYAAGVPV ALWDESAAKD PGSRGQWQSS FAASGSGSFG SPSASRHHPA  180
PEKPRLMESA SRSSRGFDDE DDDDEEFGKR EGSSSHKELT VKLDGKGKGG DHDQRPNTPR  240
SKHSATEQRR RSKINDRQVS EHSCQKPRQE WTMNLSCRFQ ILRELIPHSD QKRDKASFLL  300
EVIEYIRFLQ EKVQKYESSI PGWSQDNTKL MPWVKVYFRS FWKNARNNNE SPGDGISDPS  360
QVMKNGSAPP GYMFSGSDNS IPVAPAMVST AQNPTDSDMA AGLSYKAMET PTNFANADNM  420
TTQVQPQWLR PSGSADCAVS GEILNEQELT VDEGTISMSS AYSQGLLTTL TQALQSSGID  480
LSQASISVQI NLGKRAINKR PAATVTTSGA KDHEDPVSAN QTMGHSRAGC SVEESSQAPK  540
RHKADNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943315.10.0transcription factor BIM2 isoform X1
RefseqXP_029116531.10.0transcription factor BIM2 isoform X1
TrEMBLA0A2H3ZP090.0A0A2H3ZP09_PHODC; transcription factor BIM2 isoform X2
STRINGXP_008788920.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-48BES1-interacting Myc-like protein 2