PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YB | ||||||||
Protein Properties | Length: 336aa MW: 36396.7 Da PI: 9.2087 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 153 | 5.4e-48 | 145 | 240 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r q++f+Pianv+rim+ +lP +akis+dak t+ ecvse+isf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv pl+ yl++yre+eg+ XP_010943286.1 145 RGQEHFMPIANVIRIMRMILPMHAKISDDAKVTILECVSEYISFITGEANQRCQREQRKTIAAEDVIWAMGKLGFDDYVGPLRRYLQRYREIEGD 239 6799*****************************************************************************************99 PP NF-YB 97 k 97 + XP_010943286.1 240 H 240 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.6E-43 | 142 | 241 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.26E-34 | 147 | 245 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-22 | 150 | 214 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.0E-13 | 178 | 196 | No hit | No description |
PRINTS | PR00615 | 5.0E-13 | 197 | 215 | No hit | No description |
PRINTS | PR00615 | 5.0E-13 | 216 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAGGGDANPV FPRLPRISSA FFGQTTFPWP HTRKKSAAHR LTANPLHENR PPALMQTSQK 60 PRVLVAQDTR AALPTPLFST FLKLYSFALT ELFWLAGTAW PFADGINASQ TGPAGVLQAG 120 SAAGTTVSPG GAATVPAAQP PVNLRGQEHF MPIANVIRIM RMILPMHAKI SDDAKVTILE 180 CVSEYISFIT GEANQRCQRE QRKTIAAEDV IWAMGKLGFD DYVGPLRRYL QRYREIEGDH 240 RIGLQGGDHF PIVKQRRHPQ NTAAPSVCSQ PPLMCSSMPR LLPSSSLMMP PTAPPLRFNH 300 LCGEGSGSGY FLGMYGGDDG AGASDSQAPP MADFFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 7e-50 | 142 | 235 | 4 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943286.1 | 0.0 | nuclear transcription factor Y subunit B-8-like isoform X1 | ||||
TrEMBL | A0A2H3YH18 | 1e-102 | A0A2H3YH18_PHODC; nuclear transcription factor Y subunit B-6-like | ||||
STRING | XP_008798409.1 | 1e-103 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-52 | nuclear factor Y, subunit B6 |