PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943246.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 436aa MW: 47967.5 Da PI: 6.9482 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.3 | 3.9e-11 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +++rtG C yG++C+++H+ XP_010943246.1 50 PGEPNCIYYLRTGLCGYGSNCRYNHP 75 5789*********************9 PP | |||||||
2 | zf-CCCH | 38.7 | 1.7e-12 | 90 | 115 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tGtCk+G++Ck++H++ XP_010943246.1 90 GQPDCQFFLKTGTCKFGATCKYHHPQ 115 6899********************97 PP | |||||||
3 | zf-CCCH | 37.2 | 5e-12 | 137 | 160 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_010943246.1 137 KSCPYYMRTGLCKFGTACKFNHPQ 160 56********************97 PP | |||||||
4 | zf-CCCH | 39.4 | 9.8e-13 | 277 | 302 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG +Ck++H++ XP_010943246.1 277 DQPECQYYMKTGSCKYGTSCKYHHPK 302 689*********************96 PP | |||||||
5 | zf-CCCH | 27.4 | 6e-09 | 322 | 345 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+ +G CkyG++CkF H++ XP_010943246.1 322 PVCTFYGMYGSCKYGSTCKFDHPF 345 78********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.094 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 55 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-7 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.751 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-10 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 138 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 275 | 302 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 275 | 303 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-10 | 277 | 302 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 278 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 281 | 303 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-4 | 318 | 345 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 318 | 346 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-5 | 320 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-6 | 322 | 345 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 323 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MPDTRPVPSN AAADSSDACQ DNLEETMWQV KAEDCKGGDD AHRNPYPDRP GEPNCIYYLR 60 TGLCGYGSNC RYNHPDYIRQ GSGELPERDG QPDCQFFLKT GTCKFGATCK YHHPQDKHDP 120 HPVQLNILGL PLRKDEKSCP YYMRTGLCKF GTACKFNHPQ PTSHATMLPV TGPSPYGSTG 180 YPAASPSGLP LIAGLSMWPF SRPPYMSNQH IQGVPCMSLV LPPTQGAMPV QQGWSTDTGG 240 INNVASAGVV GSTQISNPKH HAQSGSSTPV NFPERPDQPE CQYYMKTGSC KYGTSCKYHH 300 PKERNQVAMC TIGPLGLPLR PPVCTFYGMY GSCKYGSTCK FDHPFMGYYN YTLPAFSLPG 360 VPDHTVLFSD SRNSQAMWMP SEDSPSKTMR LLDQHVKSET SEEPQGSDDN NHGNHSTQTS 420 PSHIAHHSES PEKYSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943246.1 | 0.0 | zinc finger CCCH domain-containing protein 33 isoform X2 | ||||
TrEMBL | A0A2H3YTC1 | 0.0 | A0A2H3YTC1_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_008803512.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-87 | C3H family protein |