PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943207.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 370aa    MW: 39947 Da    PI: 8.9558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943207.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21.1e-191661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_010943207.1 16 KGPWSPEEDEALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding54.23.4e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
   XP_010943207.1  70 PFTPEEDDTIIRAHRRFGNK-WATIARLLS-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.7731166IPR017930Myb domain
SuperFamilySSF466895.24E-3313109IPR009057Homeodomain-like
SMARTSM007178.1E-181564IPR001005SANT/Myb domain
PfamPF002492.4E-191661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-271769IPR009057Homeodomain-like
CDDcd001678.12E-171860No hitNo description
SMARTSM007171.0E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129420.59768117IPR017930Myb domain
CDDcd001677.83E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2370116IPR009057Homeodomain-like
PfamPF002491.3E-1470112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAASMSNRSK DMDRIKGPWS PEEDEALQRL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRP FTPEEDDTII RAHRRFGNKW ATIARLLSGR TDNAIKNHWN STLKRKYSSA  120
AVAPAIDDAA LVAADDAAAR PLKRSSSVGP VLSSGGGLCL SPGSPSGSDL SDSSHPLISP  180
VVAAAASASH IYRPVPRTGG IVPPTSSAHQ HHHTEATAAV SSTLQTNNDD PVTSLSLSLP  240
GSDKPEPSDH HRANQDQLQL LAAPAPLAQA MDLHPPPPPL AQATPLHPPP PPPTMASPSA  300
ADERRRPPEE ERRPAFPFSA EFLAVMQEMI RNEVRNYMSG LEQSGMMCVQ PPQESIRNAA  360
IKRIGVTKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40151163104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-401511657158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-401511657158MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-41151163104C-Myb DNA-Binding Domain
1msf_C9e-41151163104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943207.10.0transcription factor MYB44
TrEMBLA0A3Q0ILH20.0A0A3Q0ILH2_PHODC; transcription factor MYB44-like isoform X2
STRINGXP_008811216.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-67myb domain protein 73