PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943199.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 320aa    MW: 35488.1 Da    PI: 6.6742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943199.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11157203455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er RR+++ ++f eL  ++P +     kK +Ka++L  Av+Y+k+Lq
  XP_010943199.1 157 DHIIAERHRREKLSQRFIELSAVVPGL-----KKKDKASVLGDAVKYVKELQ 203
                     699************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-10158207No hitNo description
SMARTSM003538.1E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEIPGDRWSF ELGMDESCLI NQWDMSMITE FTSQVAPDLR GGFQQLSSES CNSYPSLHLR  60
GSASEVRHAE RPKKIQKINC WNSCTTKQNL ALDPDDSSPT SLLFCNQNPP NWEVIGGPVK  120
RKDKMGLVVS HGSEQNLETV THQGSKAASL GPSHAQDHII AERHRREKLS QRFIELSAVV  180
PGLKKKDKAS VLGDAVKYVK ELQERVKTLE YQTAKRTIES VTLVKKSKLS VDDGGSSSND  240
DNNSDGLENS IPEIEARLSD KTILVRIHCE NHKGVMVKVL SEIEKLHVTV TDASIMSFAG  300
SSINITVMAQ ASSYFYTDQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12150229182Transcription factor MYC2
5gnj_B2e-12150229182Transcription factor MYC2
5gnj_E2e-12150229182Transcription factor MYC2
5gnj_F2e-12150229182Transcription factor MYC2
5gnj_G2e-12150229182Transcription factor MYC2
5gnj_I2e-12150229182Transcription factor MYC2
5gnj_M2e-12150229182Transcription factor MYC2
5gnj_N2e-12150229182Transcription factor MYC2
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943199.20.0transcription factor bHLH18 isoform X1
RefseqXP_019707639.10.0transcription factor bHLH18 isoform X1
SwissprotQ9T0724e-53BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3ZN281e-117A0A2H3ZN28_PHODC; transcription factor bHLH18-like
STRINGXP_008787362.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-52bHLH family protein