PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943164.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24343.4 Da    PI: 8.6402
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943164.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1750103457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++t+ q+e Le  F k+r++   ++ +LA ++gL+ +qV vWFqNrRa++k+
  XP_010943164.1  50 KRRLTDAQVEFLEMSFGKERKLESGRKVHLAGEIGLDPKQVAVWFQNRRARHKN 103
                     4579************************************************95 PP
2HD-ZIP_I/II116.31.7e-3749140293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krrl++ qv++LE+sF +e+kLe+ rKv+la e+gl+p+qvavWFqnrRAR+k+kqlE++y +Lk+a+da++ e+++Le+ev +L+e+l++
  XP_010943164.1  49 RKRRLTDAQVEFLEMSFGKERKLESGRKVHLAGEIGLDPKQVAVWFQNRRARHKNKQLEEEYLKLKSAHDAIVVEKCHLENEVLKLKEKLSK 140
                     8***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.95344104IPR001356Homeobox domain
SMARTSM003897.7E-1747108IPR001356Homeobox domain
SuperFamilySSF466891.8E-1648106IPR009057Homeodomain-like
CDDcd000861.25E-1449105No hitNo description
PfamPF000463.5E-1550103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-1851110IPR009057Homeodomain-like
PRINTSPR000317.8E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000317.8E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTKAIPSQVE EELASLMNFG MHSQRTEGET RTRRRRRKPK ANGAEGEARK RRLTDAQVEF  60
LEMSFGKERK LESGRKVHLA GEIGLDPKQV AVWFQNRRAR HKNKQLEEEY LKLKSAHDAI  120
VVEKCHLENE VLKLKEKLSK AEESIRKLSE TVNGACGGGG GGSGGGGESG GSPTSSFSTV  180
TYHPLVGEFG VDGEVDFMYI PEYYFSNYMD WGNPYGIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13351RRRRKPKANGAEGEARKRR
23551RRKPKANGAEGEARKRR
396104RRARHKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943164.11e-161homeobox-leucine zipper protein HOX12
SwissprotQ7XI858e-57HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A2H3Y9T61e-106A0A2H3Y9T6_PHODC; homeobox-leucine zipper protein HOX12-like
STRINGXP_008795628.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-37homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]