PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943149.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 406aa    MW: 44786.6 Da    PI: 4.3283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943149.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.47e-201812610128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                     tdeelv +++ ++ +g+++++ +vi+ev+ +++ePw+ p      e+ wy + ++d ++ +g+ +  +t+ gyWk+  +d ++++ ++ +vg k+
  XP_010943149.1  18 TDEELV-QFMGERKAGDPVPA-NVITEVNPFSIEPWNSP------EDIWYLYNPEDPQSLNGDSEFNVTRIGYWKSR-NDLRIFT-GTPTVGRKT 102
                     8*****.99999999***999.99**************9......467***************************76.6688888.8999***** PP

             NAM 105 tLvfykgrapkgektdWvmheyrl 128
                     +  fy g+ap+g++t W+mhey++
  XP_010943149.1 103 MREFYVGKAPNGNRTGWMMHEYQA 126
                     **********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.7419149IPR003441NAC domain
SuperFamilySSF1019412.75E-269149IPR003441NAC domain
PfamPF023654.0E-1014125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MCPSAPVSVP PDINILSTDE ELVQFMGERK AGDPVPANVI TEVNPFSIEP WNSPEDIWYL  60
YNPEDPQSLN GDSEFNVTRI GYWKSRNDLR IFTGTPTVGR KTMREFYVGK APNGNRTGWM  120
MHEYQAEQKT INGINKEQDY SSLCRVFLQI DERPNHEEQH NSAIADGAEC DYVEYALLNI  180
LEQEENNLSS RDAENRSQTI GGDEQGQSVL SGTSVTDPIT DDRFEEKYAT CDFSKGDYLE  240
LNDLCSSETS SSSSDNSSLM SVNSDEFFDA DALLRDLEND HNVRVEEEHG ECRYNVSASV  300
KSNRVVIMPP TPGSVCSNSR SNLVVEGGTS ANPIPEEARA SEPSPSADEL SHSGRASDSG  360
KSPDSHSDQS SSDSSHGSRT SKGQGSKSAG RIAKLGKKYY CCFRSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-22314711163NO APICAL MERISTEM PROTEIN
1ut4_B7e-22314711163NO APICAL MERISTEM PROTEIN
1ut7_A7e-22314711163NO APICAL MERISTEM PROTEIN
1ut7_B7e-22314711163NO APICAL MERISTEM PROTEIN
4dul_A7e-22314711163NAC domain-containing protein 19
4dul_B7e-22314711163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943149.10.0NAC domain-containing protein 41 isoform X1
TrEMBLA0A2H3WYY40.0A0A2H3WYY4_PHODC; NAC domain-containing protein 105-like
STRINGXP_008775798.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-27NAC domain containing protein 57