PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942997.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HB-other
Protein Properties Length: 367aa    MW: 40861.2 Da    PI: 8.1578
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942997.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.5e-081375656
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                    +ft++++ e+e + ++  n  p +e +  LA+k            ++ +qV +WFqNrR+ ++
  XP_010942997.1 13 RFTHNEVVEMEMCLQEvnNAIPAREVICALAEKFsksaeragkiAVQPKQVWNWFQNRRYAQR 75
                    69999999*****99666999*********************99***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-10576IPR009057Homeodomain-like
SMARTSM003890.0038781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-61278IPR009057Homeodomain-like
PROSITE profilePS500719.5881377IPR001356Homeobox domain
CDDcd000864.65E-41375No hitNo description
PfamPF000461.6E-51375IPR001356Homeobox domain
PfamPF167196.0E-37117255IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRPPHGGGP VFRFTHNEVV EMEMCLQEVN NAIPAREVIC ALAEKFSKSA ERAGKIAVQP  60
KQVWNWFQNR RYAQRAKLGK APGKLSISPM PRDESLPFRN VAPVSASSGR NSMDTPQVEF  120
EAKSARDGAW YDVAAFLSHR MFETGDPEVR VRFSGFGVEE DEWVNVRRCV RQRSLPCEAA  180
ECVAVLPGDL ILCFQVXVSL QPFFLKEGKE QALYFDAHVL DAQRRRHDIR GCRCRFLVRY  240
DHDQSEEIVP LRKVCRRPET DYRLQLLQAS KASGSVDLRA LPKDPSLANA SKDAGLVAQR  300
TRKQHKLMDV NTDEVTTVPV PHAMGMQTTI TTAVENSNRA APDVPMDDAA LNTGNVDKPQ  360
EGSAAGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-441152591134SHH1 SAWADEE
4iur_B1e-441152591134SHH1 SAWADEE
4iut_A1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-441152591134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701455.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-123SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3Q0ID750.0A0A3Q0ID75_PHODC; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
STRINGXP_008805937.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-112sequence-specific DNA binding transcription factors;sequence-specific DNA binding