PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | CO-like | ||||||||
Protein Properties | Length: 419aa MW: 45663.7 Da PI: 5.0663 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.1 | 2.7e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ +C+++ +lC +C + H+ H++ XP_010942892.1 4 LCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777766 PP | |||||||
2 | zf-B_box | 25.2 | 3.4e-08 | 46 | 88 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+++ ++++ C + ++ lC++C ++H g H+++++ XP_010942892.1 46 LLCDRCITQPAIVRCMEENVSLCQNCDWNGHGGsasgHKRQTI 88 57*****************************669999998765 PP | |||||||
3 | CCT | 65 | 2.2e-22 | 362 | 405 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+ktRkFeKkirY+sRKa+A+ R RvKGrFvk+ XP_010942892.1 362 RDSAVMRYKEKKKTRKFEKKIRYASRKARADVRRRVKGRFVKAG 405 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.7E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.20E-8 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.745 | 43 | 88 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.90E-4 | 47 | 88 | No hit | No description |
SMART | SM00336 | 1.8 | 48 | 88 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.587 | 362 | 404 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.3E-17 | 362 | 404 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MGLLCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCDR CITQPAIVRC 60 MEENVSLCQN CDWNGHGGSA SGHKRQTINC YSGCPSSADL SRIWSFILEF PPMADSNCEQ 120 GMGLMSINEN SVSDFWGAPD NSSTRNIASA GKMNDLETAN KLNPWIDSSS TSAGNPMLYS 180 ADQAAGSVDS TTHKLGFTGT KDLALSKDDF YEDLNMDDVD LNFENYEELF GASLSNAEQL 240 FDDAGIDSFF ELKEISAANS DCQGEFVTES SSAGQAKPMQ ATYSNAVSAD SVMSNPGSKA 300 DPNLCFPARQ ARSSLSLSFS GLTGESSAGD YQDCGISSVL FMGEPPWCPT APEGSSHTPA 360 SRDSAVMRYK EKKKTRKFEK KIRYASRKAR ADVRRRVKGR FVKAGEAYDY DPLCKTRSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942892.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10 isoform X1 | ||||
Refseq | XP_010942894.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10 isoform X1 | ||||
Swissprot | Q9LUA9 | 1e-132 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A2H3YSZ0 | 0.0 | A0A2H3YSZ0_PHODC; zinc finger protein CONSTANS-LIKE 10 isoform X2 | ||||
STRING | XP_008803173.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-104 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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