PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25713.2 Da PI: 6.8138 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.7 | 3.6e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g+lKKAeELS+LCdaeva+i+fsstgklyeyss XP_010942684.1 10 KIDNATARQVTFSKRRRGLLKKAEELSILCDAEVALIVFSSTGKLYEYSS 59 69**********************************************96 PP | |||||||
2 | K-box | 57.1 | 7.8e-20 | 91 | 170 | 19 | 98 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a L k++ + ++R++ Ge+Le Ls++eLqqLe++Le +l+++ ++K e ++eqi+ lq+k +l een++Lr+++ XP_010942684.1 91 SKHASLSKQVADMSLQLRQMRGEELEGLSIEELQQLEKALEAGLSRVIDRKGEQIMEQINGLQQKGLKLMEENTRLREQV 170 57899************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.614 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-31 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.02E-40 | 3 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.793 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.8E-17 | 92 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVREKIQIRK IDNATARQVT FSKRRRGLLK KAEELSILCD AEVALIVFSS TGKLYEYSSS 60 SMKEIIEKHS MHSKNLQKPD QPPLDLNLEN SKHASLSKQV ADMSLQLRQM RGEELEGLSI 120 EELQQLEKAL EAGLSRVIDR KGEQIMEQIN GLQQKGLKLM EENTRLREQV LKLSRVGKQM 180 MNDKENALNE DGQSSESVTN VLNPGGSQDY DDSSDTSLKL GLPGSNWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-21 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 6e-21 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 6e-21 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 6e-21 | 1 | 73 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942683.1 | 1e-164 | MADS-box protein SVP | ||||
Refseq | XP_010942684.1 | 1e-164 | MADS-box protein SVP | ||||
Swissprot | Q9FVC1 | 6e-98 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | Q2NNB9 | 1e-113 | Q2NNB9_ELAGV; MADS box transcription factor | ||||
STRING | GSMUA_Achr3P06800_001 | 1e-111 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-82 | MIKC_MADS family protein |