PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942629.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 335aa    MW: 37010.7 Da    PI: 7.0212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942629.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-14131182155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  XP_010942629.1 131 QRMSHITVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINYVKELE 182
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.73E-14129186No hitNo description
PROSITE profilePS5088815.669130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17131197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14131197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MALDAVVFPQ DLFGCTMKEL YTIGGGASNY GFGGVKDKGV VLEREIGGSG SGCGVRQEQG  60
RGRVDGVHGN WDSFCSSLVQ NLEEWDVNSS PPSETGAKDE GFAPAQEAAL GGRRKRRRTK  120
SFKNKEEVEY QRMSHITVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI IGGAINYVKE  180
LEQLLQSLEA QKRLKQRSDA APFADFFTFP QYSSSSSCST HSTAITSAAT ATNNNIREAM  240
AENWPAVADI EVTMVESHAN LKVLSRRRPK QLLKLVVGLQ SLQLTTLHLN VTTMDQMVLY  300
SFSLKVEDDC RYTSVDEIAT AVYQMLGTIQ ESGLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRRR
2113118RKRRRT
3131142RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942629.10.0transcription factor bHLH96
SwissprotQ9C7T45e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2H3X1M11e-160A0A2H3X1M1_PHODC; transcription factor bHLH96-like
STRINGXP_008776945.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]