PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | CO-like | ||||||||
Protein Properties | Length: 398aa MW: 43033.6 Da PI: 4.9345 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.6 | 1.6e-05 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ +C+ + +lC C + H+ H++ XP_010942556.1 4 LCDFCGEQRSMVYCRPDAACLCLACDHNVHSAnalsqrHSR 44 6*****************************65777777776 PP | |||||||
2 | zf-B_box | 24.2 | 6.8e-08 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C +++++++ C + ++ lC++C ++H g H+++ XP_010942556.1 46 LICGRCNSQPAGVRCIEENVSLCQNCDWNGHGGsasasgHKRKA 89 68*****************************6688999998765 PP | |||||||
3 | CCT | 62.6 | 1.3e-21 | 341 | 384 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+ RYkeK+ktRkFeKkirY+sRKa+A+ R RvKGrFvk+ XP_010942556.1 341 RDSAVIRYKEKKKTRKFEKKIRYASRKARADVRRRVKGRFVKAG 384 8899*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.385 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.0E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.91E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.759 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.0043 | 47 | 90 | No hit | No description |
PROSITE profile | PS51017 | 15.438 | 341 | 383 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.5E-16 | 341 | 383 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGLLCDFCGE QRSMVYCRPD AACLCLACDH NVHSANALSQ RHSRTLICGR CNSQPAGVRC 60 IEENVSLCQN CDWNGHGGSA SASGHKRKAI NCYSGCPSSA ELSRIWSFAL DFPPLADSNG 120 EQGLGLISIN ENSVSNCCGS PAPENGRTID LYSAGGVNDL DIIDNFNTWI GSSSNSAVAL 180 MPCNADQLVG PVDSATPKLC CTETRNHEIC KDDELYEDFN VDDVDLTFES YEELFGASHN 240 HSGQFIGDVG IDDLFEMDIS AANSNCQGTF TAEASSSGQV ESMQAAYSNA VSADSVMSNP 300 GVNADPNRCF STRQARSSFS LSFSGLTGEC SGGDYQDCAS RDSAVIRYKE KKKTRKFEKK 360 IRYASRKARA DVRRRVKGRF VKAGDAYDYD PLCQSRSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942554.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_010942555.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_019701330.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_019701332.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2H3YPW6 | 0.0 | A0A2H3YPW6_PHODC; zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
STRING | XP_008801879.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-72 | CONSTANS-like 9 |