PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942554.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 423aa    MW: 45622.4 Da    PI: 4.8016
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942554.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.7e-05444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ ++e++   +C+ +  +lC  C  + H+       H++
  XP_010942554.1  4 LCDFCGEQRSMVYCRPDAACLCLACDHNVHSAnalsqrHSR 44
                    6*****************************65777777776 PP
2zf-B_box24.17.4e-084689441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     +C +++++++   C + ++ lC++C  ++H g      H+++ 
  XP_010942554.1 46 LICGRCNSQPAGVRCIEENVSLCQNCDWNGHGGsasasgHKRKA 89
                    68*****************************6688999998765 PP
3CCT62.41.4e-21366409144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a+ RYkeK+ktRkFeKkirY+sRKa+A+ R RvKGrFvk+ 
  XP_010942554.1 366 RDSAVIRYKEKKKTRKFEKKIRYASRKARADVRRRVKGRFVKAG 409
                     8899*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.385147IPR000315B-box-type zinc finger
SMARTSM003364.0E-8147IPR000315B-box-type zinc finger
CDDcd000211.69E-6447No hitNo description
PROSITE profilePS501198.7594390IPR000315B-box-type zinc finger
CDDcd000210.002884790No hitNo description
PfamPF062032.7E-16366408IPR010402CCT domain
PROSITE profilePS5101715.438366408IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGLLCDFCGE QRSMVYCRPD AACLCLACDH NVHSANALSQ RHSRTLICGR CNSQPAGVRC  60
IEENVSLCQN CDWNGHGGSA SASGHKRKAI NCYSGCPSSA ELSRIWSFAL DFPPLADSNG  120
EQGLGLISIN ENSVSNCCGS PAPENGRTID LYSAGGVNDL DIIDNFNTWI GSSSNSAVAL  180
MPCNADQLVG PVDSATPKLC CTETRNHEIC KDDELYEDFN VDDVDLTFES YEELFGASHN  240
HSGQFIGDVG IDDLFEMDIS AANSNCQGTF TAEASSSGQV ESMQAAYSNA VSADSVMSNP  300
GVNADPNRCF STRQARSSFS LSFSGLTGEC SGGDYQDCGM SSTLVVGEPP WYPPGPESSS  360
FPTASRDSAV IRYKEKKKTR KFEKKIRYAS RKARADVRRR VKGRFVKAGD AYDYDPLCQS  420
RSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942554.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_010942555.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_019701330.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_019701332.10.0zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2H3YPW60.0A0A2H3YPW6_PHODC; zinc finger protein CONSTANS-LIKE 9-like isoform X1
STRINGXP_008801879.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.45e-84CONSTANS-like 9