PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NF-YC | ||||||||
Protein Properties | Length: 173aa MW: 19771.4 Da PI: 5.9243 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.2 | 2.8e-54 | 48 | 150 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fdflv XP_010942519.1 48 LQMFWADQyreIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFLV 142 89****99999************************************************************************************ PP NF-YC 94 divprdel 101 divprde XP_010942519.1 143 DIVPRDEG 150 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.22E-33 | 38 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-21 | 69 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-37 | 70 | 147 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDQQGHPTPP VIGVAAPVPY APATAAGGPY QAYQHLYHQQ QQQQQQMLQM FWADQYREIE 60 QTTDFKNHSL PLARIKKIMK ADEDVRMIAA EAPVVFARAC EMFILELTHR SWAHAEENKR 120 RTLQKNDIAA AITRTDVFDF LVDIVPRDEG KEDMPRALGA PSTDPLSYYY VQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-59 | 55 | 147 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942517.1 | 1e-127 | nuclear transcription factor Y subunit C-6 | ||||
Refseq | XP_010942519.1 | 1e-127 | nuclear transcription factor Y subunit C-6 | ||||
Refseq | XP_010942520.1 | 1e-127 | nuclear transcription factor Y subunit C-6 | ||||
Refseq | XP_010942521.1 | 1e-127 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q9XE33 | 2e-66 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A444ERM2 | 8e-94 | A0A444ERM2_ENSVE; Uncharacterized protein | ||||
STRING | XP_008782988.1 | 6e-90 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-65 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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