PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010942471.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 188aa MW: 20342.3 Da PI: 8.9195

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010942471.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	147.6	3.5e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dC++apyfpa++p+kfanvhk+FGasnv+kll++lp ++r+da+sslvyeA+ar+rdPvyG+vg i++lq+q+e+l+++la XP_010942471.1 13 PCAACKLLRRRCAQDCIFAPYFPADEPQKFANVHKVFGASNVSKLLQELPAHHRSDAVSSLVYEANARVRDPVYGCVGAISSLQRQIESLQTQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010942471.1 108 VAQAE 112 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.965	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MREVGRKQGT VSPCAACKLL RRRCAQDCIF APYFPADEPQ KFANVHKVFG ASNVSKLLQE 60 LPAHHRSDAV SSLVYEANAR VRDPVYGCVG AISSLQRQIE SLQTQLAVAQ AEMVRLRMRH 120 ATCLAHLGSR THTTALGTAS ASTTGSSSMA SPKQQLIAPD QHAPKSVFAL DMVIVDQTSL 180 GEPPIWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-53	9	115	7	113	LOB family transfactor Ramosa2.1
5ly0_B	9e-53	9	115	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010942471.1	1e-138	LOB domain-containing protein 4 isoform X2
Swissprot	Q9SHE9	2e-66	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2H3XQP2	1e-114	A0A2H3XQP2_PHODC; LOB domain-containing protein 4
STRING	XP_008787332.1	1e-115	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-66	LOB domain-containing protein 4