PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 866aa MW: 96266.7 Da PI: 7.3609 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.3 | 5.2e-22 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ +++++ +l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + + XP_010942377.1 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmcRQPPTQ--ELVAKDLHGIEWRLRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGE 249 99*****************************87555544..8************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_010942377.1 250 NGELRVGVRRA 260 999*****996 PP | |||||||
2 | Auxin_resp | 119.6 | 2.4e-39 | 285 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s+s+F+v++++++++lk++ s+GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rWp+SkWr+Lk XP_010942377.1 285 AWHAVNTGTMFTVYYKPRTSPSDFIVPCDQYMESLKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSNRWPGSKWRCLK 367 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-40 | 152 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-39 | 153 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.28E-21 | 157 | 259 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-20 | 159 | 260 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-22 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.2E-37 | 285 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-12 | 692 | 824 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.32E-12 | 738 | 816 | No hit | No description |
PROSITE profile | PS51745 | 24.564 | 739 | 823 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MASSEVSVVK GSNGRGESFS SGCSGTNEGG GVVVEAGQGF GAAPMAGKES EDALYTELWH 60 ACAGPLVTVP RVGERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPSKILC RVINVQLKAE 120 PDTDEVFAQV TLLPEKQDEN AVEKETLPPP PPRPRVHSFC KTLTASDTST HGGFSVLRRH 180 ADECLPPLDM CRQPPTQELV AKDLHGIEWR LRHIFRGQPR RHLLQSGWSV FVSSKRLVAG 240 DAFIFLRGEN GELRVGVRRA MRQQTNVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK 300 PRTSPSDFIV PCDQYMESLK NNHSIGMRFK MRFEGEEAPE QRFTGTIVGI EDADSNRWPG 360 SKWRCLKVRW DETSSIPRPE RVSPWKIEPA LTPPPINPLP MPRSKRPRSN VMPCSPDSSI 420 LTKEAASKVN IDPSHSHGTP RVLQGQEVMT LRNSFAENSK SDTAQKPIMW SSSCDEEKTD 480 VSVQRRLGSE KWMQMVRHEP NYMDMLPGFW PTHDSHGFSS TLFEKNPGDS RLLKSFFQDP 540 EGICNVLPGQ WSLMPPNSSY ASHEPNLKMT AQPGEQSYQK TANIRFVGQV GYSAPPGLGI 600 EQHSPNCLAH LLPTSLMENP SQPRVLKPQP SVAAENDVVK PKFSGNCKLF GFHLNSNPAA 660 SEMVTSQQMN GSTHEPEPHC HATASLNQLQ AIEPNKYSEP SKVIKSADLT PVGSEREKNF 720 QPCSQTSKDM QSKHGGSTRS CTKVHKQGIA LGRSVDLTKF NGYNDLFAEL DRMFEFQGEL 780 MSPNKNWLVV YTDNEGDMML VGDDPWREFC SMVRKIFIYT REEVQRMNPG TLTSRVEESP 840 ATSEERTAAK ERKGQAPASS VHPKSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 52 | 389 | 17 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 52 | 389 | 17 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 52 | 389 | 17 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942378.1 | 0.0 | auxin response factor 23 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2H3ZCV6 | 0.0 | A0A2H3ZCV6_PHODC; Auxin response factor | ||||
STRING | XP_008811924.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |