PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 35794.8 Da PI: 4.909 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57.8 | 2e-18 | 34 | 83 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L +++eYIk Lq XP_010942264.1 34 RSKHSATEQRRRCKINDRFQILRDLIPHN----DQKRDKASFLLEVIEYIKFLQ 83 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-23 | 31 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-19 | 32 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.984 | 32 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.81E-17 | 34 | 87 | No hit | No description |
Pfam | PF00010 | 6.5E-16 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-14 | 38 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
METVSRSSED EVELAVKGDG KSSEQKPSTP TTPRSKHSAT EQRRRCKIND RFQILRDLIP 60 HNDQKRDKAS FLLEVIEYIK FLQEKVQKYE SYQGWGQENA KLMPWSNSQG PADGLSDPSH 120 VLKNGPAPPG FMFTGKFVDN SIPIAPTMLS NTQNVAEPDM NTGTGAVLAP LQPNFCASVG 180 RESALTLPQE RLISDSDNMA SQAQPQWQRS SGPADCTISS DMLNVQEELA IDEGTISMSS 240 VYTEGILTTL TQALESLGID LSQASVSVQI NLGKRANSRR PTATTTMSSA KDLEEPSAFN 300 QVMEDSRVGS SGEESERAPK RHKTDKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942264.1 | 0.0 | transcription factor BIM2 isoform X1 | ||||
TrEMBL | A0A2H3YF49 | 0.0 | A0A2H3YF49_PHODC; transcription factor BIM2-like | ||||
STRING | XP_008797597.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 6e-62 | BES1-interacting Myc-like protein 2 |