PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942234.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 327aa    MW: 36028.9 Da    PI: 4.7937
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942234.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-071962441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                    + C+ + + +   +C+ +   lC  C   +H+       H +vp
  XP_010942234.1 19 PACESCRSAPCAVYCRADAAALCTACDADIHSAnllarrHHRVP 62
                    78*****************************6689999977776 PP
2CCT71.91.6e-24258301144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010942234.1 258 REAKVLRYREKRKTRKFEKTIRYASRKAYAETRPRIKGRFAKRS 301
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-101663IPR000315B-box-type zinc finger
CDDcd000212.50E-111963No hitNo description
PROSITE profilePS5011910.8362163IPR000315B-box-type zinc finger
PROSITE profilePS5101716.767258300IPR010402CCT domain
PfamPF062033.0E-18258300IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNDMLKVEGD SVGNGWAPPA CESCRSAPCA VYCRADAAAL CTACDADIHS ANLLARRHHR  60
VPVLPASAAG FVVRPSLNHY SHVGGPDGAD KPETELLGEE EEEDDDDDDD VVSWLLHDPL  120
MNSNQSGNGL FGDEGDGFLD LNEYNSGAEK QSVSQKQHQL DYNHGKGEKS EYLVPNGQQQ  180
HSFQMEMEYE ASKAGFGDFG CAASLSHSLS LSSMEASMVS DTTMADISNS HLQPSKGTID  240
LFSGPPLQMP PQFTPMEREA KVLRYREKRK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR  300
SDVELEVDQL FSTTMMTDSS YGIVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942234.10.0zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2H3YEG31e-152A0A2H3YEG3_PHODC; zinc finger protein CO3-like
STRINGXP_008797568.11e-153(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.18e-40CONSTANS-like 2