PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 419aa MW: 45745 Da PI: 6.1169 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.2 | 4.9e-07 | 358 | 390 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + XP_010942157.1 358 WPYPTEDDKARLVQETGLQLKQINNWFINQRKR 390 58*****************************87 PP | |||||||
2 | ELK | 25.8 | 2.4e-09 | 311 | 332 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+ +++++++E++ XP_010942157.1 311 ELKNELKQGYKNKIVDIREEIL 332 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.5E-20 | 145 | 189 | IPR005540 | KNOX1 |
Pfam | PF03790 | 8.5E-18 | 147 | 188 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.3E-25 | 198 | 253 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.5E-18 | 204 | 252 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0025 | 311 | 332 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.935 | 311 | 331 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.7E-5 | 311 | 332 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.224 | 331 | 394 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.35E-15 | 333 | 396 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-9 | 333 | 398 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-24 | 338 | 395 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.39E-10 | 345 | 395 | No hit | No description |
Pfam | PF05920 | 3.0E-17 | 351 | 390 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MPFHNHLVHE MALPPYAEQQ LGESAAVLRT MAAGSDEAVG KVSGGGGGGP SWLSSAVLRQ 60 QGHPYGADRS FLHLQTASDS SASPSAVSQW LPRPQMRGPD EENPVSGESM IAAAMSHGGR 120 GGGSSGQGGG AAEVTAVGEG TWQNARYKAE ILAHPLYEQL LAAHVACLRI ATPVDQLPRI 180 DAQLAQSQHV VAKYSVLGAA VNPDDKELNQ FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA 240 CWELEQSLQS LTGVSPGEGT GATMSDDDDD DQADSDTNLF DESFDGPDSM GFGPLLPTES 300 ERSLMERVRQ ELKNELKQGY KNKIVDIREE ILRKRRAGKL PGGTTSLLKS WWQSHSKWPY 360 PTEDDKARLV QETGLQLKQI NNWFINQRKR NWHSNPASTT ALKSKRKSNA GDNNAEHFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 334 | 398 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942157.1 | 0.0 | homeobox protein knotted-1-like 13 isoform X1 | ||||
Swissprot | P48000 | 1e-177 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2H3XJP9 | 0.0 | A0A2H3XJP9_PHODC; homeobox protein knotted-1-like 13 isoform X1 | ||||
STRING | XP_008784810.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-166 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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