PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 419aa    MW: 45745 Da    PI: 6.1169
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942157.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.24.9e-073583902254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010942157.1 358 WPYPTEDDKARLVQETGLQLKQINNWFINQRKR 390
                     58*****************************87 PP

2ELK25.82.4e-09311332122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++L+++Y+ +++++++E++
  XP_010942157.1 311 ELKNELKQGYKNKIVDIREEIL 332
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-20145189IPR005540KNOX1
PfamPF037908.5E-18147188IPR005540KNOX1
SMARTSM012562.3E-25198253IPR005541KNOX2
PfamPF037918.5E-18204252IPR005541KNOX2
SMARTSM011880.0025311332IPR005539ELK domain
PROSITE profilePS512139.935311331IPR005539ELK domain
PfamPF037891.7E-5311332IPR005539ELK domain
PROSITE profilePS5007111.224331394IPR001356Homeobox domain
SuperFamilySSF466892.35E-15333396IPR009057Homeodomain-like
SMARTSM003891.6E-9333398IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-24338395IPR009057Homeodomain-like
CDDcd000861.39E-10345395No hitNo description
PfamPF059203.0E-17351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MPFHNHLVHE MALPPYAEQQ LGESAAVLRT MAAGSDEAVG KVSGGGGGGP SWLSSAVLRQ  60
QGHPYGADRS FLHLQTASDS SASPSAVSQW LPRPQMRGPD EENPVSGESM IAAAMSHGGR  120
GGGSSGQGGG AAEVTAVGEG TWQNARYKAE ILAHPLYEQL LAAHVACLRI ATPVDQLPRI  180
DAQLAQSQHV VAKYSVLGAA VNPDDKELNQ FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA  240
CWELEQSLQS LTGVSPGEGT GATMSDDDDD DQADSDTNLF DESFDGPDSM GFGPLLPTES  300
ERSLMERVRQ ELKNELKQGY KNKIVDIREE ILRKRRAGKL PGGTTSLLKS WWQSHSKWPY  360
PTEDDKARLV QETGLQLKQI NNWFINQRKR NWHSNPASTT ALKSKRKSNA GDNNAEHFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12334398872Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942157.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotP480001e-177KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3XJP90.0A0A2H3XJP9_PHODC; homeobox protein knotted-1-like 13 isoform X1
STRINGXP_008784810.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-166KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]