PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010942137.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 263aa MW: 27801.6 Da PI: 8.7533

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010942137.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H XP_010942137.1 100 FPCNYCHRKFYSSQALGGHQNAH 122 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.59E-6	97	127	No hit	No description
PROSITE profile	PS50157	11.261	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MESAGATTHS KATSSISNDK TIMVKAKEKE GAVGGGDPPE GNEILLDLGL SNKESDDGIL 60 SSAQPVLELD LIGSLDAAAS RTAVEAPAPP ESLASEQRVF PCNYCHRKFY SSQALGGHQN 120 AHKRERSLAK HGPRPGLSPA NHPMHCFPPS MAAAPLHGAF GWRPLGIQVH SMVHKPSFGV 180 VPKVGGLLNA KHGWCRPATS IINQQPAIRR LQIENFGACG AARGPVARFD EPAVATGGYR 240 WGGGNQMSVG KEEVQKLDLS LKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010942137.1	0.0	zinc finger protein 1
TrEMBL	A0A2H3Z4F7	1e-124	A0A2H3Z4F7_PHODC; zinc finger protein 1-like
STRING	XP_008808241.1	1e-125	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	5e-34	C2H2 family protein