PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942127.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 699aa    MW: 76289.8 Da    PI: 6.5762
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942127.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.1e-28199252155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_010942127.1 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVEKLTRENVASHLQKYRL 252
                     79*******************.********************************8 PP
2Response_reg76.21.2e-25171251109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+ +l + +y +v+++ ++ +al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge + + + +  G
  XP_010942127.1  17 VLAVDDDPICLKLLEALLLQCQY-QVTTTNQAIKALKMLRENRdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKAVMKGITHG 109
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel++
  XP_010942127.1 110 ACDYLLKPVRIEELRN 125
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.3E-1821699IPR017053Response regulator B-type, plant
SuperFamilySSF521724.7E-3514138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.7E-4214168No hitNo description
SMARTSM004483.4E-3115127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.53316131IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-2317126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.00E-2239130No hitNo description
PROSITE profilePS5129411.963196255IPR017930Myb domain
SuperFamilySSF466891.47E-19196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-30197257IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-25199252IPR006447Myb domain, plants
PfamPF002492.4E-6201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MGREGGPKDQ FPVGLRVLAV DDDPICLKLL EALLLQCQYQ VTTTNQAIKA LKMLRENRDK  60
FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSANGETK AVMKGITHGA CDYLLKPVRI  120
EELRNIWQHV VRRRKFDNKD HNNYDNGDDF EKLQQGQTTG GSSDLGGKLN RKRKDQNEDD  180
EDDGQENMHD NEDPSTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKRIL DLMNVEKLTR  240
ENVASHLQKY RLYLKRLSAV ASQQANMVAA FGGRDPSSLH IGSLDGYGNF HALAASGQLP  300
ALSSFQTNGV LSRTNSVGYG LRGFAPSGIV QPGQTHCNTN SPINDLSKLQ CISLPGSKHG  360
KLLQGMPTTL ELDQLQQHKR MQEATIHLPG GFSGAGLVTG SSSNSFVNVT SSPLLSQAYR  420
QHTQSKGLGN HSSVGIPSMS SDPFHASVGG SSHLPDLGRC NDTWQGAVPL TSYQSNTLSM  480
NAPFHHDDLA NMGASVPVVS HIDSTPLNIS SSNVVAAPLH DPVTGRDVQC HASSLGGNTM  540
LMPSSLEEDS KFLNFGSAGT SKQKLKEANQ DHIHEPNLIF NSYSNPSLSN KLIVDPIAEN  600
QRLNNGYLSK KLDINGVGQT NFSAPVREQN CKIDKSTTNI QLTYKEDSTL ETAKSQGGFN  660
SNGCSFDDLV NSMIKPDRDD IAFMDGDIVC DFYPLGACM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25195258164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942127.10.0two-component response regulator ORR22 isoform X1
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2H4A1730.0A0A2H4A173_PHODC; Two-component response regulator
STRINGXP_008813668.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-120response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]