PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942047.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 335aa    MW: 37540.4 Da    PI: 6.983
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942047.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-082602942155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     + +yps+ e+  LA+++ L+ +q+ +WF N+R ++
  XP_010942047.1 260 RWPYPSEMEKDALAESTCLDPKQINNWFINQRKRH 294
                     569*****************************885 PP
2ELK35.91.6e-12214235122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyLgsL+qE+s
  XP_010942047.1 214 ELKRHLLKKYSGYLGSLRQELS 235
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-2183127IPR005540KNOX1
PfamPF037901.5E-2385126IPR005540KNOX1
SMARTSM012565.6E-25131182IPR005541KNOX2
PfamPF037912.8E-23136181IPR005541KNOX2
SMARTSM011887.6E-7214235IPR005539ELK domain
PfamPF037891.6E-9214235IPR005539ELK domain
PROSITE profilePS5121311.418214234IPR005539ELK domain
PROSITE profilePS5007112.26234297IPR001356Homeobox domain
SuperFamilySSF466891.03E-18235310IPR009057Homeodomain-like
SMARTSM003891.1E-10236301IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-25239300IPR009057Homeodomain-like
CDDcd000868.98E-12246298No hitNo description
PfamPF059205.1E-15254293IPR008422Homeobox KN domain
PROSITE patternPS000270272295IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDEFSHLGGG NTRRSLIYLS SPSAANGTTM ASPTPPRSSD AYGLSFCPAA LLQNPSPPIF  60
KDEAGSSQYQ SQKHGETYQG DVEGIKAKII SHPQYPSLLG AYMDCQKVGA PPEVIARLSA  120
IARELEGCPG CPKGASADPE LDQFMDTYCD LLVKYREELA RPLQEATDFL KNMESQFNSL  180
TNGAWACSFS TDEKCQGVGS SKLWEIDPHG EDKELKRHLL KKYSGYLGSL RQELSKKKKK  240
GKLPKEARQK LLHWWELHYR WPYPSEMEKD ALAESTCLDP KQINNWFINQ RKRHWKPSED  300
TQFTVMDGFH PQNASAGAFF VEGQFMGDGM YRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942047.10.0homeobox protein rough sheath 1
SwissprotO041351e-111KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2H3YHS31e-168A0A2H3YHS3_PHODC; homeobox protein rough sheath 1-like
STRINGXP_008798922.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-107KNOTTED-like from Arabidopsis thaliana