PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941843.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 387aa MW: 42648.2 Da PI: 6.7951

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941843.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.8e-32	257	312	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_010941843.1 257 KPRRCWSPELHRRFVAALQHLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 312 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-29	254	315	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.348	254	314	IPR017930	Myb domain
SuperFamily	SSF46689	5.97E-18	254	315	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-27	257	312	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	259	310	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MGSVTPELGL DLKLCAMKSA SGFLKEAWAI EKGEGRMAKV EECVKSLEEE RRKIEAFKRE 60 LPLCMHLIGD VIQGLKEELE QCRMDGYAMS GNVLEEFMPI KSKFEEEDRV KFEDDTKDKM 120 NWMSSAQLWS DNYSDEKKDS TPTDEKRIAE KRVGEPDHET SSLESRGRSG GGAFVPFKGL 180 SALAANARKE EKPAVGLPDL FLLSPGIKDS RSVPAVTDDH RGSDVISKAT VRAPAPSPLA 240 AAGAHLSLHA QQQTQRKPRR CWSPELHRRF VAALQHLGGA QVATPKQIRE LMKVDGLTND 300 EVKSHLQKYR LHTRKVPNAS AAVNHSVVVM GDLWVPQEHY STSQKSASQS GSPQSPLQLA 360 GAGHTISITA GDSCEEEDGK SESYSWK

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MGSVTPELGL DLKLCAMKSA SGFLKEAWAI EKGEGRMAKV EECVKSLEEE RRKIEAFKRE  60
LPLCMHLIGD VIQGLKEELE QCRMDGYAMS GNVLEEFMPI KSKFEEEDRV KFEDDTKDKM  120
NWMSSAQLWS DNYSDEKKDS TPTDEKRIAE KRVGEPDHET SSLESRGRSG GGAFVPFKGL  180
SALAANARKE EKPAVGLPDL FLLSPGIKDS RSVPAVTDDH RGSDVISKAT VRAPAPSPLA  240
AAGAHLSLHA QQQTQRKPRR CWSPELHRRF VAALQHLGGA QVATPKQIRE LMKVDGLTND  300
EVKSHLQKYR LHTRKVPNAS AAVNHSVVVM GDLWVPQEHY STSQKSASQS GSPQSPLQLA  360
GAGHTISITA GDSCEEEDGK SESYSWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	3e-14	255	316	3	63	ARR10-B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941843.1	0.0	myb family transcription factor EFM
TrEMBL	A0A2H3Y324	0.0	A0A2H3Y324_PHODC; myb family transcription factor EFM-like isoform X1
STRING	XP_008792690.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	6e-56	G2-like family protein