PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941786.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TALE

Protein Properties

Length: 560aa MW: 62203.7 Da PI: 7.1488

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941786.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.2	9.1e-11	398	435	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++++LA+++gL+ +qV++WF N R + XP_010941786.1 398 FEHflHPYPSDADKQQLARRTGLSRNQVSNWFINARVR 435 564459******************************88 PP
2	BELL	119.7	1.3e-38	260	329	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+kkakLls+l+eVdkrY++y +q+q+vi+sF+ v+g g+a+pYt lA ka+SrhFrcLkdai +q+ XP_010941786.1 260 FEHQRKKAKLLSMLDEVDKRYNHYSNQMQMVINSFDSVMGFGAATPYTILARKAMSRHFRCLKDAINKQL 329 599*****************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.4E-54	179	327	IPR006563	POX domain
Pfam	PF07526	3.6E-45	186	325	IPR006563	POX domain
PROSITE profile	PS50071	13.2	376	439	IPR001356	Homeobox domain
CDD	cd00086	1.96E-13	379	440	No hit	No description
SMART	SM00389	1.5E-11	379	443	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-17	381	446	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-29	382	445	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-19	396	435	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MSPTSSASMS HGLHQRMTTC QEHDQMQHHI AQQSRRDKLR VQGFEATNLH PLDQIEDKRL 60 DLGTLELART GSILSNMFNF PAAGLADQIS DINRLPPKPA AEFSGEWYGD KGAVMGGNFN 120 SWGDTVTDSA TMQLLLMNMP SQEPYPRSTT FGNGSFSGGV VENQGLSLSL SSSLHQLEMG 180 GVSLMRYTRF ARAATELLEE VCSVWREHLK ERRSRRQLSS SNPNYPNPSF SCANGASSGR 240 VGDSSSSPKN LSSLSSADKF EHQRKKAKLL SMLDEVDKRY NHYSNQMQMV INSFDSVMGF 300 GAATPYTILA RKAMSRHFRC LKDAINKQLK QVCELLGEKE AGSTSGISKG ETPRLRLLEQ 360 NLRQRRPFHQ IGIMDSEAWR PQRGLPERSV NVLRAWLFEH FLHPYPSDAD KQQLARRTGL 420 SRNQVSNWFI NARVRLWKPM VEEMYQQEVK EEEEDVKEGE EANPRRPLSP SHHNSPQGQG 480 PEANATGSAA TAAAAHQSND DTILMGIDAP TSAMDLCGAD MEPMDDLCGA GMRLGATGDV 540 SLTLGLRHAG NLSEKNWFYG

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MSPTSSASMS HGLHQRMTTC QEHDQMQHHI AQQSRRDKLR VQGFEATNLH PLDQIEDKRL  60
DLGTLELART GSILSNMFNF PAAGLADQIS DINRLPPKPA AEFSGEWYGD KGAVMGGNFN  120
SWGDTVTDSA TMQLLLMNMP SQEPYPRSTT FGNGSFSGGV VENQGLSLSL SSSLHQLEMG  180
GVSLMRYTRF ARAATELLEE VCSVWREHLK ERRSRRQLSS SNPNYPNPSF SCANGASSGR  240
VGDSSSSPKN LSSLSSADKF EHQRKKAKLL SMLDEVDKRY NHYSNQMQMV INSFDSVMGF  300
GAATPYTILA RKAMSRHFRC LKDAINKQLK QVCELLGEKE AGSTSGISKG ETPRLRLLEQ  360
NLRQRRPFHQ IGIMDSEAWR PQRGLPERSV NVLRAWLFEH FLHPYPSDAD KQQLARRTGL  420
SRNQVSNWFI NARVRLWKPM VEEMYQQEVK EEEEDVKEGE EANPRRPLSP SHHNSPQGQG  480
PEANATGSAA TAAAAHQSND DTILMGIDAP TSAMDLCGAD MEPMDDLCGA GMRLGATGDV  540
SLTLGLRHAG NLSEKNWFYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-17	385	443	5	63	Homeobox protein Meis2
3k2a_B	1e-17	385	443	5	63	Homeobox protein Meis2
4xrm_A	1e-17	385	443	5	63	Homeobox protein Meis2
4xrm_B	1e-17	385	443	5	63	Homeobox protein Meis2
4xrs_A	9e-18	385	442	1	58	Homeobox protein Meis1
4xrs_B	9e-18	385	442	1	58	Homeobox protein Meis1
5bng_A	1e-17	385	443	1	59	Homeobox protein Meis2
5bng_B	1e-17	385	443	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941766.1	0.0	BEL1-like homeodomain protein 4
Refseq	XP_010941776.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-128	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2H3Z605	0.0	A0A2H3Z605_PHODC; BEL1-like homeodomain protein 4
STRING	XP_008808897.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-103	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]