PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941568.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 305aa    MW: 34530.5 Da    PI: 8.4724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941568.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52111411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     lppGfrFhP+deelv++yL+k+v+g+     ++   ++ +vd++k+ePwdLp+++  + kewyfFs rd+kyatg+r+nratksgyWkatgkd+e
  XP_010941568.1  11 LPPGFRFHPRDEELVCDYLAKRVSGDGgngsFHGCPMMIDVDLNKCEPWDLPEMACVGGKEWYFFSLRDRKYATGQRTNRATKSGYWKATGKDRE 105
                     79**********************999776644445799*************7667799************************************ PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     v +  + l+g++ktLvfy+grapkg+ktdWvmhe+r+
  XP_010941568.1 106 VRR-CRLLIGMRKTLVFYQGRAPKGKKTDWVMHEFRM 141
                     *99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-603166IPR003441NAC domain
PROSITE profilePS5100556.7411166IPR003441NAC domain
PfamPF023653.4E-2712141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSFFSMVEAR LPPGFRFHPR DEELVCDYLA KRVSGDGGNG SFHGCPMMID VDLNKCEPWD  60
LPEMACVGGK EWYFFSLRDR KYATGQRTNR ATKSGYWKAT GKDREVRRCR LLIGMRKTLV  120
FYQGRAPKGK KTDWVMHEFR MEGPSNPPKF SFASKEDWVL CRVFYKSRGV ASKPITETCY  180
DDSGSSALPP LMDTYITFDQ APPSLDGHEQ VPCFSNLPLN LASHLPNAID PTIPMVERSL  240
PTKISAHKGS LPDMGSCDKK DIRAVLKHLT KLEDNPKREV HPNLGQGSLE TYLTENGLSH  300
IWNTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-47617312171NO APICAL MERISTEM PROTEIN
1ut4_B3e-47617312171NO APICAL MERISTEM PROTEIN
1ut7_A3e-47617312171NO APICAL MERISTEM PROTEIN
1ut7_B3e-47617312171NO APICAL MERISTEM PROTEIN
3swm_A3e-47617315174NAC domain-containing protein 19
3swm_B3e-47617315174NAC domain-containing protein 19
3swm_C3e-47617315174NAC domain-containing protein 19
3swm_D3e-47617315174NAC domain-containing protein 19
3swp_A3e-47617315174NAC domain-containing protein 19
3swp_B3e-47617315174NAC domain-containing protein 19
3swp_C3e-47617315174NAC domain-containing protein 19
3swp_D3e-47617315174NAC domain-containing protein 19
4dul_A3e-47617312171NAC domain-containing protein 19
4dul_B3e-47617312171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941568.10.0NAC domain-containing protein 21/22
SwissprotQ84TE61e-106NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2H3X5B90.0A0A2H3X5B9_PHODC; NAC domain-containing protein 21/22-like
STRINGXP_008778535.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-108NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]